org.biomart.martservice.query.Query类的使用及代码示例

x33g5p2x  于2022-01-28 转载在 其他  
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本文整理了Java中org.biomart.martservice.query.Query类的一些代码示例，展示了Query类的具体用法。这些代码示例主要来源于Github/Stackoverflow/Maven等平台，是从一些精选项目中提取出来的代码，具有较强的参考意义，能在一定程度帮忙到你。Query类的具体详情如下：
包路径：org.biomart.martservice.query.Query
类名称：Query

Query介绍

暂无

代码示例

代码示例来源：origin: net.sf.taverna.t2.activities/biomart-activity

  1. private void buildOutputPorts(List<Edit<?>> editList) {
  2.   Map<String, OutputPort> newOutputMap = new HashMap<String, OutputPort>();
  3.   Query query = biomartQuery.getQuery();
  4.   List<Attribute> attributes = query.getAttributes();
  5.   String formatter = query.getFormatter();
  6.   if (formatter == null) {

代码示例来源：origin: uk.org.mygrid.taverna.processors/taverna-biomart-processor

  1. Query query = new Query(biomartQuery.getQuery());
  2. List<Filter> filters = query.getFilters();
  3. for (Filter filter : filters) {
  4.   String name = filter.getQualifiedName();
  5. Object[] resultList = biomartQuery.getMartService().executeQuery(
  6.     query);
  7. if (biomartQuery.getQuery().getFormatter() == null) {
  8.   Dataset dataset = biomartQuery.getQuery().getDatasets().get(0);
  9.   results.put(dataset.getName(), new DataThing(resultList[0]));

代码示例来源：origin: net.sf.taverna.t2.ui-activities/biomart-activity-ui

  1. @Override
  2. protected String getRawTableRowsHtml() {
  3.   MartQuery q = MartServiceXMLHandler.elementToMartQuery(getConfigBean(), null);
  4.   String html="<tr><td>URL</td><td>"+q.getMartService().getLocation()+"</td></tr>";
  5.   html+="<tr><td>Location</td><td>"+q.getMartDataset().getMartURLLocation().getDisplayName() + "</td></tr>";
  6.   boolean firstFilter=true;
  7.   for (Filter filter : q.getQuery().getFilters()) {
  8.     html+=firstFilter ? "<tr><td>Filter</td><td>" : "<tr><td></td></td>";
  9.     firstFilter=false;
  10.     html+=filter.getName()+"</td></tr>";
  11.   }
  12.   boolean firstAttribute=true;
  13.   for (Attribute attribute : q.getQuery().getAttributes()) {
  14.     html+=firstAttribute ? "<tr><td>Attribute</td><td>" : "<tr><td></td><td>";
  15.     firstAttribute=false;
  16.     html+=attribute.getName()+"</td></tr>";
  17.   }
  18.   html+="<tr><td>Dataset</td><td>"+q.getMartDataset().getDisplayName()+"</td></tr>";
  19.   return html;
  20. }

代码示例来源：origin: net.sf.taverna.t2.activities/biomart-activity

  1. private void buildInputPorts(List<Edit<?>> editList) {
  2.   Map<String, ActivityInputPort> newInputMap = new HashMap<String, ActivityInputPort>();
  3.   List<Filter> filters = biomartQuery.getQuery().getFilters();
  4.   // Create new input ports corresponding to filters
  5.   for (Filter filter : filters) {
  6.     String name = filter.getQualifiedName() + "_filter";
  7.     if (inputMap.containsKey(name)) {
  8.       newInputMap.put(name, inputMap.remove(name));
  9.     } else {
  10.       ActivityInputPort inputPort = null;
  11.       if (filter.isList()) {
  12.         inputPort = edits.createActivityInputPort(name, 1, true,
  13.             new ArrayList<Class<? extends ExternalReferenceSPI>>(),
  14.             String.class);
  15.       } else {
  16.         inputPort = edits.createActivityInputPort(name, 0, true,
  17.             new ArrayList<Class<? extends ExternalReferenceSPI>>(),
  18.             String.class);
  19.       }
  20.       newInputMap.put(name, inputPort);
  21.       editList.add(edits.getAddActivityInputPortEdit(this, inputPort));
  22.       editList.add(createAddMimeTypeAnnotationEdit(inputPort, "text/plain"));
  23.     }
  24.   }
  25.   //remove any ports still left in the map
  26.   for (ActivityInputPort inputPort : inputMap.values()) {
  27.     editList.add(edits.getRemoveActivityInputPortEdit(this, inputPort));
  28.   }
  29.   inputMap = newInputMap;
  30. }

代码示例来源：origin: uk.org.mygrid.taverna.processors/taverna-biomart-processor

  1. query.getQuery().addQueryListener(queryListener);

代码示例来源：origin: net.sf.taverna.t2.activities/biomart-activity-ui

  1. @Override
  2. protected String getRawTableRowsHtml() {
  3.   MartQuery q = MartServiceXMLHandler.elementToMartQuery(getConfigBean(), null);
  4.   String html="<tr><td>URL</td><td>"+q.getMartService().getLocation()+"</td></tr>";
  5.   html+="<tr><td>Location</td><td>"+q.getMartDataset().getMartURLLocation().getDisplayName() + "</td></tr>";
  6.   boolean firstFilter=true;
  7.   for (Filter filter : q.getQuery().getFilters()) {
  8.     html+=firstFilter ? "<tr><td>Filter</td><td>" : "<tr><td></td></td>";
  9.     firstFilter=false;
  10.     html+=filter.getName()+"</td></tr>";
  11.   }
  12.   boolean firstAttribute=true;
  13.   for (Attribute attribute : q.getQuery().getAttributes()) {
  14.     html+=firstAttribute ? "<tr><td>Attribute</td><td>" : "<tr><td></td><td>";
  15.     firstAttribute=false;
  16.     html+=attribute.getName()+"</td></tr>";
  17.   }
  18.   html+="<tr><td>Dataset</td><td>"+q.getMartDataset().getDisplayName()+"</td></tr>";
  19.   return html;
  20. }

代码示例来源：origin: net.sf.taverna.t2/biomart-activity

  1. private void buildInputPorts() {
  2.   List<Filter> filters = biomartQuery.getQuery().getFilters();
  3.   // Create new input ports corresponding to filters
  4.   for (Filter filter : filters) {
  5.     String name = filter.getQualifiedName() + "_filter";
  6.     if (filter.isList()) {
  7.       addInput(name, 1, true,
  8.           new ArrayList<Class<? extends ReferenceScheme<?>>>(),
  9.           String.class);
  10.     } else {
  11.       addInput(name, 0, true,
  12.           new ArrayList<Class<? extends ReferenceScheme<?>>>(),
  13.           String.class);
  14.     }
  15.   }
  16. }

代码示例来源：origin: net.sf.taverna.t2/biomart-activity

  1. Query query = new Query(biomartQuery.getQuery());
  2. List<Filter> filters = query.getFilters();
  3. for (Filter filter : filters) {
  4.   String name = filter.getQualifiedName();
  5. if (biomartQuery.getQuery().getFormatter() == null) {
  6.   if (STREAM_RESULTS) {
  7.     final List<Attribute> attributes = biomartQuery
  8.       .executeQuery(query);
  9.   assert resultList.length == 1;
  10.   Dataset dataset = biomartQuery.getQuery().getDatasets()
  11.       .get(0);
  12.   String outputName = dataset.getName();

代码示例来源：origin: net.sf.taverna.t2/biomart-activity

  1. private void buildOutputPorts() {
  2.   Query query = biomartQuery.getQuery();
  3.   List<Attribute> attributes = query.getAttributes();
  4.   String formatter = query.getFormatter();
  5.   if (formatter == null) {
  6.     // Create new output ports corresponding to attributes
  7.     for (Attribute attribute : attributes) {
  8.       String name = attribute.getQualifiedName();
  9.       if (attribute.getAttributes() != null) {
  10.         addOutput(name, 2, STREAM_RESULTS?1:2);
  11.       } else {
  12.         addOutput(name, 1, STREAM_RESULTS?0:1);
  13.       }
  14.     }
  15.   } else if (attributes.size() > 0) {
  16.     // create one port using the dataset name
  17.     Attribute attribute = attributes.get(0);
  18.     String name = attribute.getContainingDataset().getName();
  19.     addOutput(name, 0, 0);
  20.   }
  21. }

代码示例来源：origin: uk.org.mygrid.taverna.processors/taverna-biomart-processor

  1. private void buildInputPortsFromQuery() throws PortCreationException,
  2.     DuplicatePortNameException {
  3.   List filters = query.getQuery().getFilters();
  4.   Set<String> filterNames = new HashSet<String>();

代码示例来源：origin: net.sf.taverna.t2.activities/biomart-activity

  1. Query query = new Query(biomartQuery.getQuery());
  2. List<Filter> filters = query.getFilters();
  3. for (Filter filter : filters) {
  4.   String name = filter.getQualifiedName();
  5. if (biomartQuery.getQuery().getFormatter() == null) {
  6.   if (STREAM_RESULTS) {
  7.     final List<Attribute> attributes = biomartQuery
  8.       .executeQuery(query);
  9.   assert resultList.length == 1;
  10.   Dataset dataset = biomartQuery.getQuery().getDatasets()
  11.       .get(0);
  12.   String outputName = dataset.getName();

代码示例来源：origin: uk.org.mygrid.taverna.processors/taverna-biomart-processor

  1. private void buildOutputPortsFromQuery() throws PortCreationException,
  2.     DuplicatePortNameException {
  3.   List<Attribute> attributes = query.getQuery().getAttributes();
  4.   Set<String> attributeNames = new HashSet<String>();
  5.   String formatter = query.getQuery().getFormatter();
  6.   if (formatter == null) {

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