R使用data.table语法将逻辑列中的正值替换为列名

yh2wf1be  于 2023-03-27  发布在  其他
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我有一个包含一些逻辑列的数据集,想用相应的列名替换'TRUE'的值。我问了一个类似的问题here,并在其他S/O用户的一些建议的帮助下找到了合适的解决方案。然而,该解决方案不使用data.table语法,而是复制整个数据集,而不是通过引用替换,这很耗时。
使用data.table语法执行此操作的最适当方法是什么?
我试过这个:

# Load library    
library(data.table)

# Create dummy data.table:
mydt <- data.table(id = c(1,2,3,4,5), 
                   ptname = c("jack", "jill", "jo", "frankie", "claire"), 
                   sex = c("m", "f", "f", "m", "f"), apple = c(T,F,F,T,T), 
                   orange = c(F,T,F,T,F), 
                   pear = c(T,T,T,T,F))

# View dummy data:
> mydt
   id  ptname sex apple orange  pear
1:  1    jack   m  TRUE  FALSE  TRUE
2:  2    jill   f FALSE   TRUE  TRUE
3:  3      jo   f FALSE  FALSE  TRUE
4:  4 frankie   m  TRUE   TRUE  TRUE
5:  5  claire   f  TRUE  FALSE FALSE

# Function to recode values in a data.table:
recode.multi <- function(datacol, oldval, newval) {
  trans <- setNames(newval, oldval)
  trans[ match(datacol, names(trans)) ]
}

# Get a list of all the logical columns in the data set:
logicalcols <- names(which(mydt[, sapply(mydt, is.logical)] == TRUE))

# Apply the function to convert 'TRUE' to the relevant column names:
mydt[, (logicalcols) := lapply(.SD, recode.multi, 
                               oldval = c(FALSE, TRUE), 
                               newval = c("FALSE", names(.SD))), .SDcols = logicalcols]

# View the result:
> mydt
   id  ptname sex apple orange  pear
1:  1    jack   m apple  FALSE apple
2:  2    jill   f FALSE  apple apple
3:  3      jo   f FALSE  FALSE apple
4:  4 frankie   m apple  apple apple
5:  5  claire   f apple  FALSE FALSE

这是不正确的,因为它不是迭代每个列名以获得替换值,而是只回收第一个列名(在本例中为“apple”)。
此外,如果我颠倒新旧值的顺序,函数将忽略我对第二个值的字符串替换,并在所有情况下使用前两个列名作为替换:

# Apply the function with order of old and new values reversed:
mydt[, (logicalcols) := lapply(.SD, recode.multi, 
                               oldval = c(TRUE, FALSE), 
                               newval = c(names(.SD), "FALSE")), .SDcols = logicalcols]

# View the result:
> mydt
   id  ptname sex  apple orange   pear
1:  1    jack   m  apple orange  apple
2:  2    jill   f orange  apple  apple
3:  3      jo   f orange orange  apple
4:  4 frankie   m  apple  apple  apple
5:  5  claire   f  apple orange orange

我确信我可能遗漏了一些简单的东西,但是有人知道为什么函数不遍历列名(以及如何编辑它来做到这一点)吗?
我的预期输出如下:

> mydt
   id  ptname sex apple orange  pear
1:  1    jack   m apple  FALSE  pear
2:  2    jill   f FALSE orange  pear
3:  3      jo   f FALSE  FALSE  pear
4:  4 frankie   m apple orange  pear
5:  5  claire   f apple  FALSE FALSE

或者,任何其他建议的简洁data.table语法来实现这一点将是非常赞赏的。

vhmi4jdf

vhmi4jdf1#

我们可以使用melt/dcast方法

dcast(melt(mydt, id.var = c("id", "ptname", "sex"))[,
     value1 := as.character(value)][(value), value1 := variable], 
            id + ptname + sex~variable, value.var = "value1")
#   id  ptname sex apple orange  pear
#1:  1    jack   m apple  FALSE  pear
#2:  2    jill   f FALSE orange  pear
#3:  3      jo   f FALSE  FALSE  pear
#4:  4 frankie   m apple orange  pear
#5:  5  claire   f apple  FALSE FALSE

或者另一种选择是使用set,这将更有效

nm1 <- which(unlist(mydt[, lapply(.SD, class)])=="logical")
for(j in nm1){
    i1 <- which(mydt[[j]])
    set(mydt, i=NULL, j=j, value = as.character(mydt[[j]]))
    set(mydt, i = i1, j=j, value = names(mydt)[j])
}

mydt
#   id  ptname sex apple orange  pear
#1:  1    jack   m apple  FALSE  pear
#2:  2    jill   f FALSE orange  pear
#3:  3      jo   f FALSE  FALSE  pear
#4:  4 frankie   m apple orange  pear
#5:  5  claire   f apple  FALSE FALSE

或者评论中提到的另一种选择是

mydt[, (nm1) := Map(function(x,y) replace(x, x, y), .SD, names(mydt)[nm1]), .SDcols = nm1]
mydt
#   id  ptname sex apple orange  pear
#1:  1    jack   m apple  FALSE  pear
#2:  2    jill   f FALSE orange  pear
#3:  3      jo   f FALSE  FALSE  pear
#4:  4 frankie   m apple orange  pear
#5:  5  claire   f apple  FALSE FALSE

更新:将选项2和选项3(由于非逻辑列的数量,一个选项是不可能的)与包括18573行和650列的数据集进行比较,其中252列是具有以下时序的逻辑运行:

# Option 2:
  nm1 <- which(unlist(mydt[, lapply(.SD, is.logical)])) 
  system.time( 
   for(j in nm1){ 
     i1 <- which(mydt[[j]]) 
     set(mydt, i=NULL, j=j, value = as.character(mydt[[j]])) 
     set(mydt, i = i1, j=j, value = names(mydt)[j]) 
     } 
   ) 
 # user system elapsed 
 #  0.61 0.00 0.61

# Option 3:
system.time( 
  mydt[, (nm1) := Map(function(x,y) replace(x, x, y), .SD, names(mydt)[nm1]), .SDcols = nm1] 

   ) 
#user system elapsed 
#0.65 0.00 0.66

这两种方法都比不使用data.table语法的原始方法快得多:

# Original approach:
logitrue <- which(mydt == TRUE, arr.ind = T)
 system.time(
   mydt[logitrue, ] <- colnames(mydt)[logitrue[,2]]
 )
  # user  system elapsed 
  # 1.22    0.03    4.22

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