我有一些使用R编程语言编写的脚本，为了让我的朋友在他们自己的机器上运行这些脚本而没有任何问题，这样他们就可以像我一样获得相同的环境变量，我与他们分享了renv.lock，.Rprofile和renv/activate.R文件。
然而，他们在将依赖安装到他们的电脑上时遇到了一些问题。他们首先做的是将工作目录设置为特定的项目文件夹，然后分别运行以下命令：
renv::restore()
renv::install()字符串
在这样做的过程中，他们得到了以下错误：
renv::restore()
It looks like you've called renv::restore() in a project that hasn't been activated yet.
How would you like to proceed?
1: Activate the project and use the project library.
2: Do not activate the project and use the current library paths.
3: Cancel and resolve the situation another way.
Selection: 1
Restarting R session...
- Project 'C:/Users/Lenovo/Desktop/RProjects/the_app' loaded. [renv 1.0.3]
- None of the packages recorded in the lockfile are currently installed.
> renv::install()
- Unrecognized response: please enter 'y' or 'n', or type Ctrl + C to cancel.
- Would you like to restore the project library? [y/N]: y
The following package(s) will be updated:
# CRAN -----------------------------------------------------------------------
- base64enc [* -> 0.1-3]
- bslib [* -> 0.5.1]
- cachem [* -> 1.0.8]
- cli [* -> 3.6.1]
- commonmark [* -> 1.9.0]
- crayon [* -> 1.5.2]
- digest [* -> 0.6.33]
- ellipsis [* -> 0.3.2]
- fastmap [* -> 1.1.1]
- fontawesome [* -> 0.5.2]
- fresh [* -> 0.2.0]
- fs [* -> 1.6.3]
- glue [* -> 1.6.2]
- gridExtra [* -> 2.3]
- gtable [* -> 0.3.4]
- htmltools [* -> 0.5.6.1]
- httpuv [* -> 1.6.11]
- jquerylib [* -> 0.1.4]
- jsonlite [* -> 1.8.7]
- later [* -> 1.3.1]
- lifecycle [* -> 1.0.3]
- magrittr [* -> 2.0.3]
- memoise [* -> 2.0.1]
- mime [* -> 0.12]
- png [* -> 0.1-8]
- promises [* -> 1.2.1]
- R6 [* -> 2.5.1]
- rappdirs [* -> 0.3.3]
- Rcpp [* -> 1.0.11]
- rlang [* -> 1.1.1]
- rstudioapi [* -> 0.15.0]
- sass [* -> 0.4.7]
- shiny [* -> 1.7.5]
- shinydashboard [* -> 0.7.2]
- sourcetools [* -> 0.1.7-1]
- withr [* -> 2.5.1]
- xtable [* -> 1.8-4]
# Downloading packages -------------------------------------------------------
- Querying repositories for available binary packages ... Done!
renv was unable to query available packages from the following repositories:
- # https://packagemanager.posit.co/cran/latest/bin/windows/contrib/4.3 --------
error downloading 'https://packagemanager.posit.co/cran/latest/bin/windows/contrib/4.3/PACKAGES.rds' [curl: (35) schannel: next InitializeSecurityContext failed: Unknown error (0x80092012) - The revocation function was unable to check revocation for the certificate.]
error downloading 'https://packagemanager.posit.co/cran/latest/bin/windows/contrib/4.3/PACKAGES.gz' [curl: (35) schannel: next InitializeSecurityContext failed: Unknown error (0x80092012) - The revocation function was unable to check revocation for the certificate.]
error downloading 'https://packagemanager.posit.co/cran/latest/bin/windows/contrib/4.3/PACKAGES' [curl: (35) schannel: next InitializeSecurityContext failed: Unknown error (0x80092012) - The revocation function was unable to check revocation for the certificate.]
- Querying repositories for available source packages ... Done!
renv was unable to query available packages from the following repositories:
- # https://packagemanager.posit.co/cran/latest/src/contrib --------------------
error downloading 'https://packagemanager.posit.co/cran/latest/src/contrib/PACKAGES.rds' [curl: (35) schannel: next InitializeSecurityContext failed: Unknown error (0x80092012) - The revocation function was unable to check revocation for the certificate.]
error downloading 'https://packagemanager.posit.co/cran/latest/src/contrib/PACKAGES.gz' [curl: (35) schannel: next InitializeSecurityContext failed: Unknown error (0x80092012) - The revocation function was unable to check revocation for the certificate.]
error downloading 'https://packagemanager.posit.co/cran/latest/src/contrib/PACKAGES' [curl: (35) schannel: next InitializeSecurityContext failed: Unknown error (0x80092012) - The revocation function was unable to check revocation for the certificate.]
Warning: failed to find binary for 'htmltools 0.5.6.1' in package repositories
Warning: failed to find source for 'htmltools 0.5.6.1' in package repositories
Error: failed to retrieve package '[email protected]'
Traceback (most recent calls last):
31: source("renv/activate.R")
30: withVisible(eval(ei, envir))
29: eval(ei, envir)
28: eval(ei, envir)
27: local(...) at activate.R#2
26: eval.parent(substitute(eval(quote(expr), envir)))
25: eval(expr, p)
24: eval(expr, p)
23: eval(quote(...), new.env())
22: eval(quote(...), new.env())
21: renv_bootstrap_exec(project, libpath, version) at activate.R#1176
20: if (!renv_bootstrap_load(project, libpath, version))
renv_bootstrap_run(version, libpath) at activate.R#1009
19: renv::load(project) at activate.R#864
18: renv_load_finish(project, lockfile)
17: renv_load_report_synchronized(project, lockfile)
16: restore(project, prompt = FALSE, exclude = "renv")
15: renv_restore_run_actions(project, diff, current, lockfile, rebuild)
14: retrieve(packages)
13: handler(package, renv_retrieve_impl(package))
12: renv_retrieve_impl(package)
11: renv_retrieve_successful(record, path)
10: (function() {
repos <- if (is.null(desc$biocViews))
getOption("repos")
else renv_bioconductor_repos()
renv_scope_options(repos = repos)
renv_retrieve_successful_recurse(deps)
})()
9: renv_retrieve_successful_recurse(deps)
8: renv_retrieve_successful_recurse_impl(remote)
7: dynamic(key = list(remote = remote), value = renv_retrieve_successful_recurse_impl_one(remote))
6: the$dynamic_objects[[id]] %||% {
dlog("dynamic", "memoizing dynamic value for '%s'", id)
value
}
5: renv_retrieve_successful_recurse_impl_one(remote)
4: renv_retrieve_impl(remote)
3: renv_retrieve_repos(record)
2: stopf("failed to retrieve package '%s'", renv_record_format_remote(record))
1: stop(sprintf(fmt, ...), call. = call.)型
然后运行renv::diagnostics()命令，得到以下结果：
> renv::diagnostics()
Diagnostics Report [renv 1.0.3]
===============================
# Session Info ---------------------------------------------------------------
R version 4.3.1 (2023-06-16 ucrt)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: Windows 10 x64 (build 19045)
Matrix products: default
locale:
[1] LC_COLLATE=English_United Kingdom.utf8
[2] LC_CTYPE=English_United Kingdom.utf8
[3] LC_MONETARY=English_United Kingdom.utf8
[4] LC_NUMERIC=C
[5] LC_TIME=English_United Kingdom.utf8
time zone: Europe/London
tzcode source: internal
attached base packages:
[1] stats graphics datasets grDevices utils methods base
loaded via a namespace (and not attached):
[1] compiler_4.3.1 tools_4.3.1 renv_1.0.3
# Project --------------------------------------------------------------------
Project path: "C:/Users/Lenovo/Desktop/RProjects/the_app"
# Status ---------------------------------------------------------------------
The following package(s) are missing:
package installed recorded used
base64enc n y ?
bslib n y ?
cachem n y ?
cli n y ?
commonmark n y ?
crayon n y ?
digest n y ?
ellipsis n y ?
fastmap n y ?
fontawesome n y ?
fresh n y y
fs n y ?
glue n y ?
gridExtra n y y
gtable n y ?
htmltools n y ?
httpuv n y ?
jquerylib n y ?
jsonlite n y y
later n y ?
lifecycle n y ?
magrittr n y ?
memoise n y ?
mime n y ?
png n y y
promises n y ?
R6 n y ?
rappdirs n y ?
Rcpp n y ?
rlang n y ?
rstudioapi n y ?
sass n y ?
shiny n y y
shinydashboard n y y
sourcetools n y ?
withr n y ?
xtable n y ?
See ?renv::status() for advice on resolving these issues.
# Packages -------------------------------------------------------------------
Library Source Lockfile Source Path Dependency
KernSmooth 2.23-21 CRAN <NA> <NA> [2] <NA>
MASS 7.3-60 CRAN <NA> <NA> [2] <NA>
Matrix 1.5-4.1 CRAN <NA> <NA> [2] <NA>
R6 <NA> <NA> 2.5.1 CRAN <NA> <NA>
Rcpp <NA> <NA> 1.0.11 CRAN <NA> <NA>
base <NA> <NA> <NA> <NA> [2] direct
base64enc <NA> <NA> 0.1-3 CRAN <NA> <NA>
boot 1.3-28.1 CRAN <NA> <NA> [2] <NA>
bslib <NA> <NA> 0.5.1 CRAN <NA> <NA>
cachem <NA> <NA> 1.0.8 CRAN <NA> <NA>
class 7.3-22 CRAN <NA> <NA> [2] <NA>
cli <NA> <NA> 3.6.1 CRAN <NA> <NA>
cluster 2.1.4 CRAN <NA> <NA> [2] <NA>
codetools 0.2-19 CRAN <NA> <NA> [2] <NA>
commonmark <NA> <NA> 1.9.0 CRAN <NA> <NA>
crayon <NA> <NA> 1.5.2 CRAN <NA> <NA>
digest <NA> <NA> 0.6.33 CRAN <NA> <NA>
ellipsis <NA> <NA> 0.3.2 CRAN <NA> <NA>
fastmap <NA> <NA> 1.1.1 CRAN <NA> <NA>
fontawesome <NA> <NA> 0.5.2 CRAN <NA> <NA>
foreign 0.8-84 CRAN <NA> <NA> [2] <NA>
fresh <NA> <NA> 0.2.0 CRAN <NA> direct
fs <NA> <NA> 1.6.3 CRAN <NA> <NA>
glue <NA> <NA> 1.6.2 CRAN <NA> <NA>
grDevices <NA> <NA> <NA> <NA> [2] indirect
grid <NA> <NA> <NA> <NA> [2] direct
gridExtra <NA> <NA> 2.3 CRAN <NA> direct
gtable <NA> <NA> 0.3.4 CRAN <NA> <NA>
htmltools <NA> <NA> 0.5.6.1 CRAN <NA> <NA>
httpuv <NA> <NA> 1.6.11 CRAN <NA> <NA>
jquerylib <NA> <NA> 0.1.4 CRAN <NA> <NA>
jsonlite <NA> <NA> 1.8.7 CRAN <NA> direct
later <NA> <NA> 1.3.1 CRAN <NA> <NA>
lattice 0.21-8 CRAN <NA> <NA> [2] <NA>
lifecycle <NA> <NA> 1.0.3 CRAN <NA> <NA>
magrittr <NA> <NA> 2.0.3 CRAN <NA> <NA>
memoise <NA> <NA> 2.0.1 CRAN <NA> <NA>
mgcv 1.8-42 CRAN <NA> <NA> [2] <NA>
mime <NA> <NA> 0.12 CRAN <NA> <NA>
nlme 3.1-162 CRAN <NA> <NA> [2] <NA>
nnet 7.3-19 CRAN <NA> <NA> [2] <NA>
png <NA> <NA> 0.1-8 CRAN <NA> direct
promises <NA> <NA> 1.2.1 CRAN <NA> <NA>
rappdirs <NA> <NA> 0.3.3 CRAN <NA> <NA>
renv 1.0.3 CRAN 1.0.3 CRAN [1] direct
rlang <NA> <NA> 1.1.1 CRAN <NA> <NA>
rpart 4.1.19 CRAN <NA> <NA> [2] <NA>
rstudioapi <NA> <NA> 0.15.0 CRAN <NA> <NA>
sass <NA> <NA> 0.4.7 CRAN <NA> <NA>
shiny <NA> <NA> 1.7.5 CRAN <NA> direct
shinydashboard <NA> <NA> 0.7.2 CRAN <NA> direct
sourcetools <NA> <NA> 0.1.7-1 CRAN <NA> <NA>
spatial 7.3-16 CRAN <NA> <NA> [2] <NA>
survival 3.5-5 CRAN <NA> <NA> [2] <NA>
tools <NA> <NA> <NA> <NA> [2] direct
utils <NA> <NA> <NA> <NA> [2] direct
withr <NA> <NA> 2.5.1 CRAN <NA> <NA>
xtable <NA> <NA> 1.8-4 CRAN <NA> <NA>
[1]: C:/Users/Lenovo/Desktop/RProjects/the_app/renv/library/R-4.3/x86_64-w64-mingw32
[2]: C:/Users/Lenovo/AppData/Local/R/cache/R/renv/sandbox/R-4.3/x86_64-w64-mingw32/bd3f13aa
# ABI ------------------------------------------------------------------------
- ABI conflict checks are not yet implemented on Windows.
# User Profile ---------------------------------------------------------------
[no user profile detected]
# Settings -------------------------------------------------------------------
List of 13
$ bioconductor.version : NULL
$ external.libraries : chr(0)
$ ignored.packages : chr(0)
$ package.dependency.fields: chr [1:3] "Imports" "Depends" "LinkingTo"
$ ppm.enabled : NULL
$ ppm.ignored.urls : NULL
$ r.version : NULL
$ snapshot.type : chr "implicit"
$ use.cache : logi TRUE
$ vcs.ignore.cellar : logi TRUE
$ vcs.ignore.library : logi TRUE
$ vcs.ignore.local : logi TRUE
$ vcs.manage.ignores : logi TRUE
# Options --------------------------------------------------------------------
List of 8
$ defaultPackages : chr [1:6] "datasets" "utils" "grDevices" "graphics" ...
$ download.file.method : chr "libcurl"
$ download.file.extra : NULL
$ install.packages.compile.from.source: chr "interactive"
$ pkgType : chr "both"
$ repos : Named chr "https://packagemanager.posit.co/cran/latest"
..- attr(*, "names")= chr "CRAN"
$ renv.consent : logi TRUE
$ renv.verbose : logi TRUE
# Environment Variables ------------------------------------------------------
HOME = C:\Users\Lenovo\Documents
LANG = <NA>
MAKE = <NA>
R_LIBS = <NA>
R_LIBS_SITE = C:/PROGRA~1/R/R-43~1.1/site-library
R_LIBS_USER = C:/Users/Lenovo/Desktop/RProjects/the_app/renv/library/R-4.3/x86_64-w64-mingw32
RENV_DEFAULT_R_ENVIRON = <NA>
RENV_DEFAULT_R_ENVIRON_USER = <NA>
RENV_DEFAULT_R_LIBS = <NA>
RENV_DEFAULT_R_LIBS_SITE = C:/PROGRA~1/R/R-43~1.1/site-library
RENV_DEFAULT_R_LIBS_USER = C:\Users\Lenovo\AppData\Local/R/win-library/4.3
RENV_DEFAULT_R_PROFILE = <NA>
RENV_DEFAULT_R_PROFILE_USER = <NA>
RENV_PROJECT = C:/Users/Lenovo/Desktop/RProjects/the_app
# PATH -----------------------------------------------------------------------
- C:\Users\Lenovo\OriPrograms\Scripts
- C:\Users\Lenovo\OriPrograms
- c:\rtools43\x86_64-w64-mingw32.static.posix\bin
- c:\rtools43\usr\bin
- C:\Program Files\R\R-4.3.1\bin\x64
- C:\Program Files\R\R-4.3.1\bin\x64
- C:\Program Files (x86)\VMware\VMware Player\bin\
- C:\Program Files (x86)\Common Files\Oracle\Java\javapath
- C:\php
- C:\Program Files\MiKTeX 2.9\miktex\bin\x64\
- C:\Program Files\Git\cmd
- C:\Program Files\PostgreSQL\14\bin
- C:\Program Files\PostgreSQL\14\lib
- C:\Program Files\Google\Google Apps Migration\
- C:\Users\Lenovo\anaconda3\Library\bin
- C:\Python36-32
- C:\Python36-32\Lib\site-packages
- C:\Python36-32\Scripts
- C:\Users\Lenovo\OriPrograms\Microsoft VS Code\bin
- C:\Users\Lenovo\anaconda3\Scripts
- C:\Program Files\RStudio\resources\app\bin\quarto\bin
- C:\Program Files\RStudio\resources\app\bin\postback
# Cache ----------------------------------------------------------------------
There are a total of 37 packages installed in the renv cache.
Cache path: "C:/Users/Lenovo/AppData/Local/R/cache/R/renv/cache/v5/R-4.3/x86_64-w64-mingw32"型
我的问题是我们如何解决这个问题？任何建议都非常感谢。
1条答案
按热度按时间kgsdhlau1#
因此，正如评论中所建议的，这个问题通过首先在项目目录中创建
.Renviron文件来解决，然后将以下行添加到该文件（.Renviron）：Sys.setenv(RENV_DOWNLOAD_METHOD = getOption("download.file.method"))个并保存它。