net.sourceforge.ondex.core.DataSource类的使用及代码示例

x33g5p2x  于2022-01-18 转载在 其他  
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本文整理了Java中net.sourceforge.ondex.core.DataSource类的一些代码示例，展示了DataSource类的具体用法。这些代码示例主要来源于Github/Stackoverflow/Maven等平台，是从一些精选项目中提取出来的代码，具有较强的参考意义，能在一定程度帮忙到你。DataSource类的具体详情如下：
包路径：net.sourceforge.ondex.core.DataSource
类名称：DataSource

DataSource介绍

[英]This class represents the data source for the created Concepts and Relations. It has a mandatory name and an optional description field for additional information.
[中]此类表示所创建概念和关系的数据源。它有一个必需的名称和一个可选的描述字段以获取附加信息。

代码示例

代码示例来源：origin: net.sourceforge.ondex.apps/ovtk2

  1. @Override
  2.   public int compare(DataSource o1, DataSource o2) {
  3.     return o1.getId().compareToIgnoreCase(o2.getId());
  4.   }
  5. });

代码示例来源：origin: net.sourceforge.ondex.modules/json

  1. /**
  2.  * Generate metadata for Data Source.
  3.  * @param ds
  4.  *            A Data Source (from the Ondex API).
  5.  * @return JSONObject
  6.  *            JSONObject containing information about the Data Source.
  7.  */
  8. private JSONObject buildDataSource(DataSource ds) {
  9.  JSONObject dsJson= new JSONObject();
  10.   dsJson.put(JSONAttributeNames.ID, ds.getId());
  11.  dsJson.put(JSONAttributeNames.FULLNAME, ds.getFullname());
  12.  dsJson.put(JSONAttributeNames.DESCRIPTION, ds.getDescription());
  13.  return dsJson;
  14. }

代码示例来源：origin: net.sourceforge.ondex.modules/cyjs_json

  1. /**
  2.    * Generate metadata for Data Source.
  3.    * @param ds
  4.    *            A Data Source (from the Ondex API).
  5.    * @return String
  6.    *            String containing full name or id.
  7.    */
  8.   private String/*JSONObject*/ buildDataSource(DataSource ds) {
  9.    String elementOf;
  10. /*     JSONObject dsJson= new JSONObject();
  11.    dsJson.put(JSONAttributeNames.ID, ds.getId());
  12.    dsJson.put(JSONAttributeNames.FULLNAME, ds.getFullname());
  13.    dsJson.put(JSONAttributeNames.DESCRIPTION, ds.getDescription());
  14. */
  15.    if(ds.getId().equals("")) {
  16.     elementOf= ds.getFullname();
  17.     }
  18.    else {
  19.     elementOf= ds.getId();
  20.     }
  21.    return elementOf/*dsJson*/;
  22.   }

代码示例来源：origin: net.sourceforge.ondex.modules/generic

  1. public void start() {
  2.   ONDEXGraphMetaData metadata = graph.getMetaData();
  3.   for (ConceptClass cc : metadata.getConceptClasses()) {
  4.     System.out.println("ConceptClass " + cc.getId() + " " + cc.getFullname());
  5.     System.out.println("\tConcepts = " + graph.getConceptsOfConceptClass(cc).size());
  6.   }
  7.   for (DataSource dataSource : metadata.getDataSources()) {
  8.     System.out.println("DataSource " + dataSource.getId() + " " + dataSource.getFullname());
  9.     System.out.println("\tConcepts = " + graph.getConceptsOfDataSource(dataSource).size());
  10.   }
  11.   for (AttributeName att : metadata.getAttributeNames()) {
  12.     System.out.println("AttributeName " + att.getId() + " " + att.getFullname());
  13.     System.out.println("\tConcepts = " + graph.getConceptsOfAttributeName(att).size());
  14.     System.out.println("\tRelations = " + graph.getRelationsOfAttributeName(att).size());
  15.   }
  16.   for (RelationType rt : metadata.getRelationTypes()) {
  17.     System.out.println("RelationType " + rt.getId() + " " + rt.getFullname());
  18.     System.out.println("\tRelations = " + graph.getRelationsOfRelationType(rt).size());
  19.   }
  20. }

代码示例来源：origin: net.sourceforge.ondex.core/algorithms

  1. /**
  2.  * Add DataSource restriction valid at any depth for the to Concept If no DataSource
  3.  * restriction are set then any DataSource is valid
  4.  * 
  5.  * @param fromDataSource
  6.  *            the fromDataSource that will be valid
  7.  * @param toDataSource
  8.  *            the toDataSource that will be valid
  9.  */
  10. public void addDataSourcePair(DataSource fromDataSource, DataSource toDataSource) {
  11.   if (validDataSourcePair == null) {
  12.     validDataSourcePair = new HashMap<String, Set<String>>(1);
  13.   }
  14.   Set<String> validToDataSources = validDataSourcePair.get(fromDataSource.getId());
  15.   if (validToDataSources == null) {
  16.     validToDataSources = new HashSet<String>(1);
  17.     validDataSourcePair.put(fromDataSource.getId(), validToDataSources);
  18.   }
  19.   validToDataSources.add(toDataSource.getId());
  20. }

代码示例来源：origin: net.sourceforge.ondex.apps/ovtk2

  1. /**
  2.  * Returns a JLabel for the data source
  3.  */
  4. @Override
  5. public Object getElementAt(int index) {
  6.   JLabel label = null;
  7.   if (index > -1) {
  8.     DataSource dataSource = dataSources.get(index);
  9.     String name = dataSource.getFullname();
  10.     if (name.trim().length() == 0)
  11.       name = dataSource.getId();
  12.     label = new JLabel(name);
  13.     label.setName(dataSource.getId());
  14.     label.setToolTipText("(" + dataSource.getId() + ") " + dataSource.getDescription());
  15.   }
  16.   return label;
  17. }

代码示例来源：origin: net.sourceforge.ondex.modules/interaction

  1. etName = et.getId();
  2. String dsName = ds.getFullname();
  3. if (dsName == null || dsName.length() == 0)
  4.   dsName = ds.getId();
  5. if (dataSource != null)
  6.   dsName = dataSource;

代码示例来源：origin: net.sourceforge.ondex.apps/ovtk2

  1. /**
  2.  * Returns node color for a given DataSource.
  3.  * 
  4.  * @param ds
  5.  *            DataSource
  6.  * @return Color
  7.  */
  8. public static Color getColorForDataSource(DataSource ds) {
  9.   String key = "DataSource.Color." + ds.getId();
  10.   if (visual.getProperty(key) != null) {
  11.     return convertToColor(visual.getProperty(key));
  12.   }
  13.   return defaultColor;
  14. }

代码示例来源：origin: net.sourceforge.ondex.apps/ovtk2

  1. /**
  2.  * Constructs user input to add a DataSource.
  3.  * 
  4.  * @param aog
  5.  *            AbstractONDEXGraph to add to
  6.  * @param dataSource
  7.  *            DataSource to use
  8.  */
  9. public DialogDataSource(ONDEXGraph aog, DataSource dataSource) {
  10.   super("Dialog.DataSource.Title", "Properties16.gif");
  11.   this.aog = aog;
  12.   // set existing information
  13.   id.setText(dataSource.getId());
  14.   fullname.setText(dataSource.getFullname());
  15.   description.setText(dataSource.getDescription());
  16.   // set everything to disabled
  17.   id.setEditable(false);
  18.   fullname.setEditable(false);
  19.   description.setEnabled(false);
  20.   this.getContentPane().setLayout(new BorderLayout());
  21.   this.getContentPane().add(makeProperties(), BorderLayout.CENTER);
  22.   this.getContentPane().add(makeButtonsPanel(null, "Dialog.DataSource.Cancel"), BorderLayout.SOUTH);
  23.   this.pack();
  24. }

代码示例来源：origin: net.sourceforge.ondex.modules/rdf

  1. public static String dataSourceToUri(String graphUri, DataSource dataSource) {
  2.   return toUri(graphUri, "cv", dataSource.getId());
  3. }
  4. public static String ccToUri(String graphUri, ConceptClass cc) {

代码示例来源：origin: net.sourceforge.ondex.modules/oxl

  1. /**
  2.  * Writes DataSource content in a xml stream writer.
  3.  * 
  4.  * @param xmlw
  5.  *            xml stream to write in
  6.  * @param dataSource
  7.  *            DataSource object
  8.  * @throws XMLStreamException
  9.  *             if xml writing fails
  10.  */
  11. private void buildDataSourceContent(XMLStreamWriter2 xmlw,
  12.     DataSource dataSource, RefOrVal rov) throws XMLStreamException {
  13.   switch (rov) {
  14.   case REF:
  15.     buildIdRef(xmlw, dataSource);
  16.     break;
  17.   case VAL:
  18.     xmlw.writeStartElement(XMLTagNames.ID);
  19.     xmlw.writeCharacters(dataSource.getId());
  20.     xmlw.writeEndElement();
  21.     xmlw.writeStartElement(XMLTagNames.FULLNAME);
  22.     xmlw.writeCharacters(dataSource.getFullname());
  23.     xmlw.writeEndElement();
  24.     xmlw.writeStartElement(XMLTagNames.DESCRIPTION);
  25.     xmlw.writeCharacters(dataSource.getDescription());
  26.     xmlw.writeEndElement();
  27.   }
  28. }

代码示例来源：origin: net.sourceforge.ondex.modules/tab-tools

  1. public String getValue(ONDEXEntity cOrr) throws InvalidOndexEntityException {
  2.   if(AbstractConcept.class.isAssignableFrom(cOrr.getClass())){
  3.     return ((ONDEXConcept)cOrr).getElementOf().getId();
  4.   }
  5.   throw new InvalidOndexEntityException(cOrr.getClass()+": is not an Ondex class for which cv is known");
  6. }

代码示例来源：origin: net.sourceforge.ondex.core/tools

  1. if (!nomd.checkDataSource(dataSource.getId()))
  2.   nomd
  3.       .createDataSource(dataSource.getId(), dataSource.getFullname(), dataSource
  4.           .getDescription());

代码示例来源：origin: net.sourceforge.ondex.core/sql

  1. @Override
  2. public Set<ONDEXConcept> getConceptsOfDataSource(DataSource dataSource) {
  3.   Set<Integer> is = new HashSet<Integer>();
  4.   try {
  5.     PreparedStatement getCofDataSource = conn
  6.         .prepareStatement("select id from concept where sid = ? and DataSource = ?");
  7.     getCofDataSource.setLong(1, sid);
  8.     getCofDataSource.setString(2, dataSource.getId());
  9.     ResultSet rs = getCofDataSource.executeQuery();
  10.     while (rs.next()) {
  11.       is.add(rs.getInt(1));
  12.     }
  13.     rs.close();
  14.     getCofDataSource.close();
  15.   } catch (SQLException e) {
  16.     // TODO Auto-generated catch block
  17.     e.printStackTrace();
  18.   }
  19.   return BitSetFunctions.create(this, ONDEXConcept.class, is);
  20. }

代码示例来源：origin: net.sourceforge.ondex.apps/ovtk2

  1. private void step() {
  2.     boolean match = false;
  3.     next = null;
  4.     List<String> ofInterest = new ArrayList<String>();
  5.     while (!match && view.hasNext()) {
  6.       ONDEXConcept c = view.next();
  7.       String[] cCvs = c.getElementOf().getId().split(":");
  8.       for (String cCv : cCvs) {
  9.         // System.err.println(cCv+" :: "+validArgs+" :: "+validArgs.contains(cCv.trim()));
  10.         if (validArgs.contains(cCv)) {
  11.           match = true;
  12.           ofInterest.add(cCv);
  13.         }
  14.       }
  15.     }
  16.     if (ofInterest.size() == 0) {
  17.       next = null;
  18.     } else {
  19.       next = ofInterest.toArray(new String[ofInterest.size()]);
  20.     }
  21.   }
  22. }

代码示例来源：origin: net.sourceforge.ondex.modules/generic

  1. @Override
  2. public void start() {
  3.   for (DataSource dataSource : graph.getMetaData().getDataSources()) {
  4.     Set<ONDEXConcept> concepts = graph.getConceptsOfDataSource(dataSource);
  5.     System.out.println("Data source C.V. id\tNumber of instances");
  6.     if (concepts.size() > 0) {
  7.       System.out.println(dataSource.getId() + "\t" + concepts.size());
  8.     }
  9.   }
  10. }

代码示例来源：origin: net.sourceforge.ondex.core/sql

  1. @Override
  2. public boolean deleteConceptAccession(String accession,
  3.     DataSource elementOf) {
  4.   
  5.   try {
  6.     PreparedStatement deleteCA = sg.getConnection().prepareStatement("delete from conceptaccession where (sid,id) = (?,?) and accession = ? and DataSource = ?");
  7.     deleteCA.setLong(1, getSID());
  8.     deleteCA.setInt(2, id);
  9.     deleteCA.setString(3, accession);
  10.     deleteCA.setString(4, elementOf.getId());
  11.     
  12.     deleteCA.execute();
  13.     deleteCA.close();
  14.     
  15.     return true;
  16.   } catch (SQLException e) {
  17.     // TODO Auto-generated catch block
  18.     e.printStackTrace();
  19.   }
  20.   return false;
  21.   
  22. }

代码示例来源：origin: net.sourceforge.ondex.apps/ovtk2

  1. private void step() {
  2.     boolean match = false;
  3.     next = null;
  4.     List<String> ofInterest = new ArrayList<String>();
  5.     while (!match && view.hasNext()) {
  6.       ONDEXRelation r = view.next();
  7.       String[] cCvs = arrAnd(r.getFromConcept().getElementOf().getId().split(":"), r.getToConcept().getElementOf().getId().split(":"), validArgs);
  8.       if (cCvs.length > 0) {
  9.         match = true;
  10.         next = cCvs;
  11.       }
  12.     }
  13.   }
  14. }

代码示例来源：origin: net.sourceforge.ondex.apps/ovtk2

  1. /**
  2.  * 
  3.  * @param conceptAccessions
  4.  * @return
  5.  */
  6. private static final String getAccessionOfCV(Set<ConceptAccession> conceptAccessions, String cv) {
  7.   for (ConceptAccession acc : conceptAccessions) {
  8.     if (acc.getElementOf().getId().equals(cv)) {
  9.       return acc.getAccession();
  10.     }
  11.   }
  12.   return null;
  13. }

代码示例来源：origin: net.sourceforge.ondex.core/berkeley

  1. /**
  2.  * Returns a byte array serialisation of this class.
  3.  * 
  4.  * @return byte[]
  5.  */
  6. @Override
  7. public byte[] serialise(long sid) {
  8.   try {
  9.     // create a byte output stream
  10.     ByteArrayOutputStream baos = new ByteArrayOutputStream(100);
  11.     // object output stream for serialisation
  12.     DataOutputStream dos = new DataOutputStream(
  13.         new BufferedOutputStream(baos));
  14.     dos.writeLong(sid);
  15.     dos.writeInt(conceptId);
  16.     dos.writeUTF(accession);
  17.     dos.writeUTF(elementOf.getId());
  18.     dos.writeBoolean(ambiguous);
  19.     dos.flush();
  20.     byte[] retVal = baos.toByteArray();
  21.     // make sure streams are closed
  22.     dos.close();
  23.     baos.close();
  24.     return retVal;
  25.   } catch (IOException ioe) {
  26.     throw new StorageException(ioe.getMessage());
  27.   }
  28. }

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