org.molgenis.data.Entity.getEntities()方法的使用及代码示例

x33g5p2x  于2022-01-19 转载在 其他  
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本文整理了Java中org.molgenis.data.Entity.getEntities()方法的一些代码示例，展示了Entity.getEntities()的具体用法。这些代码示例主要来源于Github/Stackoverflow/Maven等平台，是从一些精选项目中提取出来的代码，具有较强的参考意义，能在一定程度帮忙到你。Entity.getEntities()方法的具体详情如下：
包路径：org.molgenis.data.Entity
类名称：Entity
方法名：getEntities

Entity.getEntities介绍

暂无

代码示例

代码示例来源：origin: org.molgenis/molgenis-data-icd10

@Override
 public Iterable<Entity> children(@Nonnull Entity diseaseClassEntity) {
  return diseaseClassEntity.getEntities(DISEASE_CLASS_CHILDREN_ATTRIBUTE_NAME);
 }
}

代码示例来源：origin: org.molgenis/molgenis-ontology-core

private boolean qualifiedNodePath(String nodePath, Entity entity) {
 Iterable<Entity> nodePathEntities =
   entity.getEntities(OntologyTermMetaData.ONTOLOGY_TERM_NODE_PATH);
 return Lists.newArrayList(nodePathEntities)
   .stream()
   .anyMatch(
     nodePathEntity -> {
      String childNodePath =
        nodePathEntity.getString(OntologyTermNodePathMetaData.NODE_PATH);
      return !StringUtils.equals(nodePath, childNodePath)
        && childNodePath.startsWith(nodePath);
     });
}

代码示例来源：origin: org.molgenis/molgenis-settings

@Override
public Iterable<Entity> getEntities(String attributeName) {
 return getEntity().getEntities(attributeName);
}

代码示例来源：origin: org.molgenis/molgenis-settings

@Override
public <E extends Entity> Iterable<E> getEntities(String attributeName, Class<E> clazz) {
 return getEntity().getEntities(attributeName, clazz);
}

代码示例来源：origin: org.molgenis/molgenis-data-semanticsearch

private Entity findAttributeEntity(EntityType entityType, String attributeName)
{
  Entity entityTypeEntity = dataService.findOneById(ENTITY_TYPE_META_DATA, entityType.getId());
  Optional<Entity> result = stream(entityTypeEntity.getEntities(ATTRIBUTES).spliterator(), false)
      .filter(att -> attributeName.equals(att.getString(AttributeMetadata.NAME))).findFirst();
  return result.isPresent() ? result.get() : null;
}

代码示例来源：origin: org.molgenis/molgenis-navigator

@Override
public Iterable<Entity> getEntities(String attributeName) {
 return stream(delegate().getEntities(attributeName))
   .map(this::newPretendingEntity)
   .collect(toList());
}

代码示例来源：origin: org.molgenis/molgenis-semantic-search

private Entity findAttributeEntity(EntityType entityType, String attributeName) {
 Entity entityTypeEntity = dataService.findOneById(ENTITY_TYPE_META_DATA, entityType.getId());
 Optional<Entity> result =
   stream(entityTypeEntity.getEntities(ATTRIBUTES).spliterator(), false)
     .filter(att -> attributeName.equals(att.getString(AttributeMetadata.NAME)))
     .findFirst();
 return result.orElse(null);
}

代码示例来源：origin: org.molgenis/molgenis-semantic-search

private void recursivelyCollectAttributeIdentifiers(
  Iterable<Entity> attributeEntities, List<String> attributeIdentifiers) {
 for (Entity attributeEntity : attributeEntities) {
  if (!attributeEntity.getString(AttributeMetadata.TYPE).equals(COMPOUND.toString())) {
   attributeIdentifiers.add(attributeEntity.getString(AttributeMetadata.ID));
  }
  Iterable<Entity> entities = attributeEntity.getEntities(AttributeMetadata.CHILDREN);
  if (entities != null) {
   recursivelyCollectAttributeIdentifiers(entities, attributeIdentifiers);
  }
 }
}

代码示例来源：origin: org.molgenis/molgenis-semantic-search

@Override
public void removeAttributeTag(
  String entity, String attribute, String relationIRI, String ontologyTermIRI) {
 Entity attributeEntity = findAttributeEntity(entity, attribute);
 Iterable<Entity> tags = attributeEntity.getEntities(AttributeMetadata.TAGS);
 Iterable<Entity> newTags =
   StreamSupport.stream(tags.spliterator(), false)
     .filter(e -> !isSameTag(relationIRI, ontologyTermIRI, e))
     .collect(Collectors.toList());
 attributeEntity.set(AttributeMetadata.TAGS, newTags);
 dataService.update(ATTRIBUTE_META_DATA, attributeEntity);
 updateEntityTypeEntityWithNewAttributeEntity(entity, attribute, attributeEntity);
}

代码示例来源：origin: org.molgenis/molgenis-semantic-search

@Override
public void addAttributeTag(
  EntityType entityType, SemanticTag<Attribute, LabeledResource, LabeledResource> tag) {
 Entity entity = findAttributeEntity(entityType, tag.getSubject().getName());
 List<Entity> tags = new ArrayList<>();
 for (Entity tagEntity : entity.getEntities(AttributeMetadata.TAGS)) {
  tags.add(tagEntity);
 }
 tags.add(getTagEntity(tag));
 entity.set(AttributeMetadata.TAGS, tags);
 dataService.update(ATTRIBUTE_META_DATA, entity);
}

代码示例来源：origin: org.molgenis/molgenis-data-semanticsearch

@Override
public void addAttributeTag(EntityType entityType, SemanticTag<Attribute, LabeledResource, LabeledResource> tag)
{
  Entity entity = findAttributeEntity(entityType, tag.getSubject().getName());
  List<Entity> tags = new ArrayList<Entity>();
  for (Entity tagEntity : entity.getEntities(AttributeMetadata.TAGS))
  {
    tags.add(tagEntity);
  }
  tags.add(getTagEntity(tag));
  entity.set(AttributeMetadata.TAGS, tags);
  dataService.update(ATTRIBUTE_META_DATA, entity);
}

代码示例来源：origin: org.molgenis/molgenis-semantic-search

@Override
public Iterable<SemanticTag<Package, OntologyTerm, Ontology>> getTagsForPackage(
  Package aPackage) {
 Entity packageEntity = dataService.findOneById(PACKAGE, aPackage.getId());
 if (packageEntity == null) {
  throw new UnknownEntityException(PACKAGE, aPackage.getId());
 }
 List<SemanticTag<Package, OntologyTerm, Ontology>> tags = Lists.newArrayList();
 for (Entity tagEntity : packageEntity.getEntities(PackageMetadata.TAGS)) {
  tags.add(asTag(aPackage, tagEntity));
 }
 return tags;
}

代码示例来源：origin: org.molgenis/molgenis-ontology-core

private String getOntologyTermNodePath(OntologyTerm ontologyTerm) {
 Entity ontologyTermEntity =
   dataService.findOne(
     ONTOLOGY_TERM, new QueryImpl<>().eq(ONTOLOGY_TERM_IRI, ontologyTerm.getIRI()));
 Iterable<Entity> ontologyTermNodePathEntities =
   ontologyTermEntity.getEntities(OntologyTermMetaData.ONTOLOGY_TERM_NODE_PATH);
 return ontologyTermNodePathEntities
   .iterator()
   .next()
   .getString(OntologyTermNodePathMetaData.NODE_PATH);
}

代码示例来源：origin: org.molgenis/molgenis-data-semanticsearch

@Override
@RunAsSystem
public Multimap<Relation, LabeledResource> getTagsForAttribute(EntityType entityType, Attribute attribute)
{
  Entity entity = findAttributeEntity(entityType, attribute.getName());
  if (entity == null) return ArrayListMultimap.<Relation, LabeledResource>create();
  Multimap<Relation, LabeledResource> tags = ArrayListMultimap.<Relation, LabeledResource>create();
  for (Entity tagEntity : entity.getEntities(AttributeMetadata.TAGS))
  {
    SemanticTag<Attribute, LabeledResource, LabeledResource> tag = SemanticTag.asTag(attribute, tagEntity);
    tags.put(tag.getRelation(), tag.getObject());
  }
  return tags;
}

代码示例来源：origin: org.molgenis/molgenis-semantic-search

@Override
@RunAsSystem
public Multimap<Relation, LabeledResource> getTagsForAttribute(
  EntityType entityType, Attribute attribute) {
 Entity entity = findAttributeEntity(entityType, attribute.getName());
 if (entity == null) return ArrayListMultimap.create();
 Multimap<Relation, LabeledResource> tags = ArrayListMultimap.create();
 for (Entity tagEntity : entity.getEntities(AttributeMetadata.TAGS)) {
  SemanticTag<Attribute, LabeledResource, LabeledResource> tag =
    SemanticTag.asTag(attribute, tagEntity);
  tags.put(tag.getRelation(), tag.getObject());
 }
 return tags;
}

代码示例来源：origin: org.molgenis/molgenis-data-semanticsearch

@Override
public void addAttributeTag(EntityType entityType, SemanticTag<Attribute, OntologyTerm, Ontology> tag)
{
  Entity entity = findAttributeEntity(entityType.getId(), tag.getSubject().getName());
  List<Entity> tags = new ArrayList<Entity>();
  for (Entity tagEntity : entity.getEntities(AttributeMetadata.TAGS))
  {
    tags.add(tagEntity);
  }
  tags.add(getTagEntity(tag));
  entity.set(AttributeMetadata.TAGS, tags);
  dataService.update(ATTRIBUTE_META_DATA, entity);
}

代码示例来源：origin: org.molgenis/molgenis-semantic-search

@Override
public void addAttributeTag(
  EntityType entityType, SemanticTag<Attribute, OntologyTerm, Ontology> tag) {
 Entity entity = findAttributeEntity(entityType.getId(), tag.getSubject().getName());
 List<Entity> tags = new ArrayList<>();
 for (Entity tagEntity : entity.getEntities(AttributeMetadata.TAGS)) {
  tags.add(tagEntity);
 }
 tags.add(getTagEntity(tag));
 entity.set(AttributeMetadata.TAGS, tags);
 dataService.update(ATTRIBUTE_META_DATA, entity);
}

代码示例来源：origin: org.molgenis/molgenis-data-semanticsearch

@Override
public void removeAttributeTag(String entity, String attribute, String relationIRI, String ontologyTermIRI)
{
  Entity attributeEntity = findAttributeEntity(entity, attribute);
  Iterable<Entity> tags = attributeEntity.getEntities(AttributeMetadata.TAGS);
  Iterable<Entity> newTags = Iterables.filter(tags, e -> !isSameTag(relationIRI, ontologyTermIRI, e));
  attributeEntity.set(AttributeMetadata.TAGS, newTags);
  dataService.update(ATTRIBUTE_META_DATA, attributeEntity);
  updateEntityTypeEntityWithNewAttributeEntity(entity, attribute, attributeEntity);
}

代码示例来源：origin: org.molgenis/molgenis-data-semanticsearch

@Override
public void removeAttributeTag(EntityType entityType, SemanticTag<Attribute, OntologyTerm, Ontology> removeTag)
{
  Attribute attribute = removeTag.getSubject();
  Entity attributeEntity = findAttributeEntity(entityType.getId(), attribute.getName());
  List<Entity> tags = new ArrayList<Entity>();
  for (Entity tagEntity : attributeEntity.getEntities(AttributeMetadata.TAGS))
  {
    SemanticTag<Attribute, OntologyTerm, Ontology> tag = asTag(attribute, tagEntity);
    if (!removeTag.equals(tag))
    {
      tags.add(tagEntity);
    }
  }
  attributeEntity.set(AttributeMetadata.TAGS, tags);
  dataService.update(ATTRIBUTE_META_DATA, attributeEntity);
}

代码示例来源：origin: org.molgenis/molgenis-semantic-search

/** A helper function that gets identifiers of all the attributes from one EntityType */
public List<String> getAttributeIdentifiers(EntityType sourceEntityType) {
 Entity entityTypeEntity =
   dataService.findOne(
     ENTITY_TYPE_META_DATA,
     new QueryImpl<>().eq(EntityTypeMetadata.ID, sourceEntityType.getId()));
 if (entityTypeEntity == null)
  throw new MolgenisDataAccessException(
    "Could not find EntityTypeEntity by the name of " + sourceEntityType.getId());
 List<String> attributeIdentifiers = new ArrayList<>();
 recursivelyCollectAttributeIdentifiers(
   entityTypeEntity.getEntities(EntityTypeMetadata.ATTRIBUTES), attributeIdentifiers);
 return attributeIdentifiers;
}

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