giny.model.Node.getIdentifier()方法的使用及代码示例

x33g5p2x  于2022-01-25 转载在 其他  
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本文整理了Java中giny.model.Node.getIdentifier()方法的一些代码示例，展示了Node.getIdentifier()的具体用法。这些代码示例主要来源于Github/Stackoverflow/Maven等平台，是从一些精选项目中提取出来的代码，具有较强的参考意义，能在一定程度帮忙到你。Node.getIdentifier()方法的具体详情如下：
包路径：giny.model.Node
类名称：Node
方法名：getIdentifier

Node.getIdentifier介绍

暂无

代码示例

代码示例来源：origin: cytoscape.coreplugins/psi-mi

  1. /**
  2.  * Create Hashkey for Edges.
  3.  *
  4.  * @param node1 First node.
  5.  * @param node2 Second node.
  6.  * @return HashKey.
  7.  */
  8. private String createEdgeKey(Node node1, Node node2, Interaction interaction) {
  9.   String node1Ident = node1.getIdentifier();
  10.   String node2Ident = node2.getIdentifier();
  11.   String interactionType = getInteractionTypeId(interaction);
  12.   return new String(node1Ident + interactionType + node2Ident);
  13. }

代码示例来源：origin: cytoscape/application

  1. private String buildStringQuery() {
  2.   final StringBuilder builder = new StringBuilder();
  3.   final Set<Node> selectedNodes = Cytoscape.getCurrentNetwork().getSelectedNodes();
  4.   for (Node node : selectedNodes) {
  5.     builder.append(node.getIdentifier() + " ");
  6.   }
  7.   return builder.toString();
  8. }

代码示例来源：origin: cytoscape/application

  1. /**
  2.  * Return all the terms in this ontology.<br>
  3.  *
  4.  * @return All ontology terms as Set object.
  5.  */
  6. public Set getTerms() {
  7.   Set<Term> terms = new HashSet<Term>();
  8.   Iterator nodeIt = ontologyGraph.nodesIterator();
  9.   while (nodeIt.hasNext()) {
  10.     final Node node = (Node) nodeIt.next();
  11.     final String id = node.getIdentifier();
  12.     final Term term = new OntologyTerm(node.getIdentifier(), this.name,
  13.                       termAttr.getStringAttribute(id,
  14.                                     OBOTags.DEF.toString()));
  15.     terms.add(term);
  16.   }
  17.   return terms;
  18. }

代码示例来源：origin: cytoscape/application

  1. public SetNestedNetworkDialog(JFrame parent, boolean modal, NodeView nodeView) {
  2.   super(parent, "Set Nested Network for " + nodeView.getNode().getIdentifier(), modal);
  3.   init(nodeView);
  4. }

代码示例来源：origin: cytoscape/application

  1. private static final List<Object> getByPassedVisProps(final NodeView nv,
  2.                final List<VisualPropertyType> bypassedVPs)
  3. {
  4.   final List<Object> bypassedProps = new ArrayList<Object>();
  5.   final CyAttributes nodeAttrs = Cytoscape.getNodeAttributes();
  6.   final String id = nv.getNode().getIdentifier();
  7.   for (final VisualPropertyType propType : bypassedVPs) {
  8.     final Object bypass = Appearance.getBypass(nodeAttrs, id, propType);
  9.     if (bypass != null)
  10.       bypassedProps.add(bypass);
  11.   }
  12.   return bypassedProps;
  13. }

代码示例来源：origin: cytoscape/application

  1. /**
  2.    * @param nodeView The clicked NodeView
  3.    * @param menu popup menu to add the Bypass menu
  4.    */
  5.   public void addNodeContextMenuItems(NodeView nodeView, JPopupMenu menu) {
  6.     NodeBypass nb = new NodeBypass();
  8.     if (menu == null)
  9.       menu = new JPopupMenu();
  11.     /*
  12.      * Add Node ID as label.
  13.      */
  14.     final String nodeID = nodeView.getNode().getIdentifier();
  15.     final JLabel nodeLabel = new JLabel(nodeID);
  17.     nodeLabel.setForeground(new Color(10, 50, 250, 150));
  18.     nodeLabel.setFont(new Font("SansSerif", Font.BOLD, 18));
  19.     nodeLabel.setBorder(new EmptyBorder(5, 10, 5, 5));
  20.     menu.add(nodeLabel);
  22.     menu.add(nb.addMenu(nodeView.getNode()));
  23.   }
  24. }

代码示例来源：origin: cytoscape.coreplugins/equation-functions

  1. /**
  2.    *  @param args the function arguments which must be either one object of type Double or Long
  3.    *  @return the result of the function evaluation which is the natural logarithm of the first argument
  4.    */
  5.   public Object evaluateFunction(final Object[] args) {
  6.     final String edgeID = (String)args[0];
  8.     final CyEdge edge = Cytoscape.getRootGraph().getEdge(edgeID);
  9.     if (edge == null)
  10.       throw new IllegalArgumentException("\"" + edgeID + "\" is not a valid edge identifier!");
  11.     
  12.     return edge.getTarget().getIdentifier();
  13.   }
  14. }

代码示例来源：origin: cytoscape.coreplugins/equation-functions

  1. /**
  2.    *  @param args the function arguments which must be either one object of type Double or Long
  3.    *  @return the result of the function evaluation which is the natural logarithm of the first argument
  4.    */
  5.   public Object evaluateFunction(final Object[] args) {
  6.     final String edgeID = (String)args[0];
  8.     final CyEdge edge = Cytoscape.getRootGraph().getEdge(edgeID);
  9.     if (edge == null)
  10.       throw new IllegalArgumentException("\"" + edgeID + "\" is not a valid edge identifier!");
  11.     
  12.     return edge.getSource().getIdentifier();
  13.   }
  14. }

代码示例来源：origin: cytoscape.coreplugins/advanced-network-merge

  1. private void prepare() {
  2.     CyAttributes cyAttributes = Cytoscape.getNodeAttributes();
  3.     if (!Arrays.asList(cyAttributes.getAttributeNames()).contains(
  4.         Semantics.CANONICAL_NAME)) {
  5.       List<Node> nodeList = Cytoscape.getCyNodesList();
  6.       int n = nodeList.size();
  7.       for (int i = 0; i < n; i++) {
  8.         String nodeID = nodeList.get(i).getIdentifier();
  9.         cyAttributes.setAttribute(nodeID, Semantics.CANONICAL_NAME,
  10.             nodeID);
  11.       }
  12.     }
  13.     cyAttributes = Cytoscape.getEdgeAttributes();
  14.     if (!Arrays.asList(cyAttributes.getAttributeNames()).contains(
  15.         Semantics.CANONICAL_NAME)) {
  16.       List<Node> edgeList = Cytoscape.getCyEdgesList();
  17.       int n = edgeList.size();
  18.       for (int i = 0; i < n; i++) {
  19.         String edgeID = edgeList.get(i).getIdentifier();
  20.         cyAttributes.setAttribute(edgeID, Semantics.CANONICAL_NAME,
  21.             edgeID);
  22.       }
  23.     }
  24.   }// TODO: remove in Cytoscape3
  25. }

代码示例来源：origin: cytoscape/application

  1. String canonicalName = node.getIdentifier();
  2. List edges = network.getAdjacentEdgesList(node, true, true, true);
  3.       String canonicalTargetName = target.getIdentifier();

代码示例来源：origin: cytoscape.coreplugins/biomart-client

  1. builder.append(n.getIdentifier());
  2. builder.append(",");

代码示例来源：origin: cytoscape.coreplugins/advanced-network-merge

  1. final String id1 = n1.getIdentifier();
  2. final String id2 = n2.getIdentifier();

代码示例来源：origin: cytoscape.coreplugins/attribute-browser

  1. public void actionPerformed(final ActionEvent e) {
  2.     final int idLocation = getIdColumn();
  3.     final Map<String, GraphObject> selectedMap = paintNodesAndEdges(idLocation);
  4.     final CyNetwork curNet = Cytoscape.getCurrentNetwork();
  5.     final List<GraphObject> nonSelectedObjects = new ArrayList<GraphObject>();
  6.     GraphObject fromMap;
  7.     if (objectType == NODES) {
  8.       for (Object curNode : curNet.getSelectedNodes()) {
  9.         fromMap = selectedMap.get(((Node) curNode).getIdentifier());
  10.         if (fromMap == null) {
  11.           nonSelectedObjects.add((GraphObject) curNode);
  12.         }
  13.       }
  14.       resetObjectColor(idLocation);
  15.       curNet.setSelectedNodeState(nonSelectedObjects, false);
  16.     } else {
  17.       for (Object curEdge : curNet.getSelectedEdges()) {
  18.         fromMap = selectedMap.get(((Edge) curEdge).getIdentifier());
  19.         if (fromMap == null) {
  20.           nonSelectedObjects.add((GraphObject) curEdge);
  21.         }
  22.       }
  23.       resetObjectColor(idLocation);
  24.       curNet.setSelectedEdgeState(nonSelectedObjects, false);
  25.     }
  26.     if (Cytoscape.getCurrentNetworkView() != Cytoscape.getNullNetworkView()) {
  27.       Cytoscape.getCurrentNetworkView().updateView();
  28.     }
  29.   }
  30. });

代码示例来源：origin: cytoscape/application

  1. /**
  2.  * Add a new ontology term to the DAG.<br>
  3.  *
  4.  * @param newTerm
  5.  */
  6. public void add(OntologyTerm newTerm) {
  7.   Node newOntologyTerm = Cytoscape.getCyNode(newTerm.getName(), true);
  8.   ontologyGraph.addNode(newOntologyTerm);
  9.   termAttr.setAttribute(newOntologyTerm.getIdentifier(), OBOTags.DEF.toString(),
  10.              newTerm.getDescription());
  11. }

代码示例来源：origin: cytoscape.coreplugins/biopax

  1. @SuppressWarnings("unchecked")
  2.   public static void setNodeToolTips(CyNetworkView networkView) {
  3.     // grab node attributes
  4.     CyAttributes nodeAttributes = Cytoscape.getNodeAttributes();
  6.     // iterate through the nodes
  7.     Iterator<NodeView> nodesIt = networkView.getNodeViewsIterator();
  8.     while (nodesIt.hasNext()) {
  9.       NodeView nodeView = nodesIt.next();
  10.       String id = nodeView.getNode().getIdentifier();
  11.       String tip = 
  12.         nodeAttributes.getStringAttribute(id, MapBioPaxToCytoscape.BIOPAX_ENTITY_TYPE)
  13.         + "\n" +
  14.         nodeAttributes.getListAttribute(id, MapBioPaxToCytoscape.BIOPAX_CELLULAR_LOCATIONS);
  16.       nodeView.setToolTip(tip);
  17.       
  18.       if(log.isDebugging())
  19.         log.debug("tooltip set "+ tip + " for node " + id);
  20.     }
  21.     networkView.updateView();
  22.   }
  23. }

代码示例来源：origin: cytoscape/application

  1. cytoscape.generated.Edge tempEdge = factory.createEdge();
  2. tempEdge.setId(curEdgeName);
  3. tempEdge.setSource(targetEdge.getSource().getIdentifier());
  4. tempEdge.setTarget(targetEdge.getTarget().getIdentifier());
  5. tempEdge.setInteraction(Cytoscape.getEdgeAttributes()
  6.                  .getStringAttribute(targetEdge.getIdentifier(),

代码示例来源：origin: cytoscape.coreplugins/biopax

  1. @Override
  2. public void actionPerformed(ActionEvent event) {
  3.   String nodeId = nodeView.getNode().getIdentifier();
  4.   String biopaxId = Cytoscape.getNodeAttributes()
  5.     .getStringAttribute(nodeId, MapBioPaxToCytoscape.BIOPAX_RDF_ID);

代码示例来源：origin: cytoscape/application

  1. /**
  2.  * Return the requested Attribute for the given Node
  3.  */
  4. public boolean setNodeAttributeValue(int node, String attribute, Object value) {
  5.   final String canonName = getNode(node).getIdentifier();
  6.   final CyAttributes attrs = Cytoscape.getNodeAttributes();
  7.   if (value instanceof Boolean) {
  8.     attrs.setAttribute(canonName, attribute, (Boolean) value);
  9.     return true;
  10.   } else if (value instanceof Integer) {
  11.     attrs.setAttribute(canonName, attribute, (Integer) value);
  12.     return true;
  13.   } else if (value instanceof Double) {
  14.     attrs.setAttribute(canonName, attribute, (Double) value);
  15.     return true;
  16.   } else if (value instanceof String) {
  17.     attrs.setAttribute(canonName, attribute, (String) value);
  18.     return true;
  19.   } else if (value instanceof List) {
  20.     attrs.setListAttribute(canonName, attribute, (List) value);
  21.     return true;
  22.   } else if (value instanceof Map) {
  23.     attrs.setMapAttribute(canonName, attribute, (Map) value);
  24.     return true;
  25.   } else {
  26.     return false;
  27.   }
  28. }

代码示例来源：origin: cytoscape/application

  1. /**
  2.  * Return the requested Attribute for the given Node
  3.  */
  4. public Object getNodeAttributeValue(int node, String attribute) {
  5.   final String canonName = getNode(node).getIdentifier();
  6.   final CyAttributes attrs = Cytoscape.getNodeAttributes();
  7.   final byte cyType = attrs.getType(attribute);
  8.   if (cyType == CyAttributes.TYPE_BOOLEAN) {
  9.     return attrs.getBooleanAttribute(canonName, attribute);
  10.   } else if (cyType == CyAttributes.TYPE_FLOATING) {
  11.     return attrs.getDoubleAttribute(canonName, attribute);
  12.   } else if (cyType == CyAttributes.TYPE_INTEGER) {
  13.     return attrs.getIntegerAttribute(canonName, attribute);
  14.   } else if (cyType == CyAttributes.TYPE_STRING) {
  15.     return attrs.getStringAttribute(canonName, attribute);
  16.   } else if (cyType == CyAttributes.TYPE_SIMPLE_LIST) {
  17.     return attrs.getListAttribute(canonName, attribute);
  18.   } else if (cyType == CyAttributes.TYPE_SIMPLE_MAP) {
  19.     return attrs.getMapAttribute(canonName, attribute);
  20.   } else {
  21.     return null;
  22.   }
  23. }

代码示例来源：origin: cytoscape/application

  1. int[] nodeIndices = Cytoscape.getCurrentNetwork().getNodeIndicesArray();
  2. for (int i=0; i<nodeIndices.length; i++){
  3.   String nodeID = Cytoscape.getRootGraph().getNode(nodeIndices[i]).getIdentifier();
  4.   Object valueObj = attributes.getAttribute(nodeID, attributeName);
  5.   if (valueObj != null){

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