本文整理了Java中org.broadinstitute.gatk.utils.Utils.skimArray()方法的一些代码示例，展示了Utils.skimArray()的具体用法。这些代码示例主要来源于Github/Stackoverflow/Maven等平台，是从一些精选项目中提取出来的代码，具有较强的参考意义，能在一定程度帮忙到你。Utils.skimArray()方法的具体详情如下：
包路径：org.broadinstitute.gatk.utils.Utils
类名称：Utils
方法名：skimArray

Utils.skimArray介绍

[英]Skims out positions of an array returning a shorter one with the remaning positions in the same order.

If the dest array provide is not long enough a new one will be created and returned with the same component type. All elements before destOffset will be copied from the input to the result array. If dest is null, a brand-new array large enough will be created where the position preceding destOffset will be left with the default value. The component type Will match the one of the source array.
[中]略过数组中的位置，以相同的顺序返回一个较短的数组。
如果dest数组不够长，将创建一个新数组，并返回相同的组件类型。destOffset之前的所有元素都将从输入复制到结果数组。如果dest为空，将创建一个足够大的全新数组，其中destOffset前面的位置将保留默认值。组件类型将与源阵列的类型匹配。

代码示例

代码示例来源：origin: broadgsa/gatk

/**
 * Skims out positions of an array returning a shorter one with the remaning positions in the same order.
 * @param original the original array to splice.
 * @param remove for each position in {@code original} indicates whether it should be spliced away ({@code true}),
 *               or retained ({@code false})
 *
 * @param <T> the array type.
 *
 * @throws IllegalArgumentException if either {@code original} or {@code remove} is {@code null},
 *    or {@code remove length is different to {@code original}'s}, or {@code original} is not in
 *    fact an array.
 *
 * @return never {@code null}.
 */
public static <T> T skimArray(final T original, final boolean[] remove) {
  return skimArray(original,0,null,0,remove,0);
}

代码示例来源：origin: broadgsa/gatk

if (length < 0)
  throw new IllegalArgumentException("the source offset goes beyond the source array length");
return skimArray(source,sourceOffset,dest,destOffset,remove,removeOffset,length);

代码示例来源：origin: broadgsa/gatk

@Test(dataProvider = "skimArrayData")
public void testSkimArray(final String original, final String remove) {
  final StringBuilder resultBuilder = new StringBuilder();
  final boolean[] removeBoolean = new boolean[remove.length()];
  for (int i = 0; i < original.length(); i++)
    if (remove.charAt(i) == '1') {
      resultBuilder.append(original.charAt(i));
      removeBoolean[i] = false;
    } else
      removeBoolean[i] = true;
  final String expected = resultBuilder.toString();
  final byte[] resultBytes = Utils.skimArray(original.getBytes(),removeBoolean);
  final String resultString = new String(resultBytes);
  Assert.assertEquals(resultString,expected);
}

代码示例来源：origin: broadgsa/gatk

Utils.skimArray(oldSampleReads,firstDeleted, newSampleReads, firstDeleted, removeIndex, firstDeleted);
for (int a = 0; a < alleleCount; a++) {
  System.arraycopy(oldSampleValues[a],0,newSampleValues[a],0,firstDeleted);
  Utils.skimArray(oldSampleValues[a], firstDeleted, newSampleValues[a], firstDeleted, removeIndex, firstDeleted);

代码示例来源：origin: broadgsa/gatk

Utils.skimArray(oldSampleReads,firstDeleted, newSampleReads, firstDeleted, removeIndex, firstDeleted);
for (int a = 0; a < alleleCount; a++) {
  System.arraycopy(oldSampleValues[a],0,newSampleValues[a],0,firstDeleted);
  Utils.skimArray(oldSampleValues[a], firstDeleted, newSampleValues[a], firstDeleted, removeIndex, firstDeleted);