本文整理了Java中org.broad.igv.bbfile.ZoomDataRecord.getChromName()
方法的一些代码示例,展示了ZoomDataRecord.getChromName()
的具体用法。这些代码示例主要来源于Github
/Stackoverflow
/Maven
等平台,是从一些精选项目中提取出来的代码,具有较强的参考意义,能在一定程度帮忙到你。ZoomDataRecord.getChromName()
方法的具体详情如下:
包路径:org.broad.igv.bbfile.ZoomDataRecord
类名称:ZoomDataRecord
方法名:getChromName
暂无
代码示例来源:origin: igvteam/igv
String chr = genome.getCanonicalChrName(rec.getChromName());
代码示例来源:origin: igvteam/igv
@Test
public void testBigBed() throws IOException {
String path = TestUtils.DATA_DIR + "bb/chr21.refseq.bb";
BBFileReader bbReader = new BBFileReader(path);
BBFileHeader bbFileHdr = bbReader.getBBFileHeader();
assertTrue(bbFileHdr.isBigBed());
String chr = "chr21";
int start = 26490012;
int end = 42182827;
for (BBZoomLevelHeader header : bbReader.getZoomLevels().getZoomLevelHeaders()) {
assertNotNull(header);
ZoomLevelIterator zlIter = bbReader.getZoomLevelIterator(header.getZoomLevel(), chr, start, chr, end, false);
while (zlIter.hasNext()) {
ZoomDataRecord rec = zlIter.next();
int n = rec.getBasesCovered();
if (n > 0) {
assertEquals(chr, rec.getChromName());
assertTrue(rec.getChromEnd() >= start && rec.getChromStart() <= end);
}
}
}
}
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