uk.ac.ebi.intact.model.Feature.getComponent()方法的使用及代码示例

x33g5p2x  于2022-01-19 转载在 其他  
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本文整理了Java中uk.ac.ebi.intact.model.Feature.getComponent()方法的一些代码示例，展示了Feature.getComponent()的具体用法。这些代码示例主要来源于Github/Stackoverflow/Maven等平台，是从一些精选项目中提取出来的代码，具有较强的参考意义，能在一定程度帮忙到你。Feature.getComponent()方法的具体详情如下：
包路径：uk.ac.ebi.intact.model.Feature
类名称：Feature
方法名：getComponent

Feature.getComponent介绍

暂无

代码示例

代码示例来源：origin: uk.ac.ebi.intact.core/intact-core-readonly

protected Key keyForFeature(Feature feature) {

    if (feature.getComponent() == null) {
      throw new IllegalArgumentException("Cannot create a feature key for feature without component: " + feature);
    }

    Key componentKey = keyFor(feature.getComponent());
    return new Key(new FeatureKeyCalculator().calculateFeatureKey(feature) + "___" + componentKey.getUniqueString());

//        return new Key( keyForAnnotatedObject( feature ).getUniqueString() + "___" + componentKey.getUniqueString() );
  }

代码示例来源：origin: uk.ac.ebi.intact.core/intact-core

protected Key keyForFeature(Feature feature) {

    if (feature.getComponent() == null) {
      throw new IllegalArgumentException("Cannot create a feature key for feature without component: " + feature);
    }

    Key componentKey = keyFor(feature.getComponent());
    return new Key(new FeatureKeyCalculator().calculateFeatureKey(feature) + "___" + componentKey.getUniqueString());

//        return new Key( keyForAnnotatedObject( feature ).getUniqueString() + "___" + componentKey.getUniqueString() );
  }

代码示例来源：origin: uk.ac.ebi.intact.core/intact-core

if (component == null && feature.getComponent() == null) {
} else if ((component == null && feature.getComponent() != null) || (component != null && feature.getComponent() == null)) {
  return false;
} else if (component.getAc() != null && feature.getComponent().getAc() != null) {
  if (!component.getAc().equals(feature.getComponent().getAc())) {
    return false;

代码示例来源：origin: uk.ac.ebi.intact.core/intact-core-readonly

if (component == null && feature.getComponent() == null) {
} else if ((component == null && feature.getComponent() != null) || (component != null && feature.getComponent() == null)) {
  return false;
} else if (component.getAc() != null && feature.getComponent().getAc() != null) {
  if (!component.getAc().equals(feature.getComponent().getAc())) {
    return false;

代码示例来源：origin: uk.ac.ebi.intact/intact-core

if ( !component.equals( feature.getComponent() ) ) {
  return false;
if ( feature.getComponent() != null ) {
  return false;

代码示例来源：origin: uk.ac.ebi.intact.core/intact-persister

log.debug("\t\t\tComponent ("+f.getComponent().getAc()+") - Interactor: "+f.getComponent().getInteractor().getShortLabel()+" - Interaction: "+f.getComponent().getInteraction().getShortLabel());

代码示例来源：origin: uk.ac.ebi.intact.util/data-conversion

Component boundComponent = boundDomain.getComponent();
Interactor interactor2 = boundComponent.getInteractor();

代码示例来源：origin: uk.ac.ebi.intact.core/intact-core-readonly

return ((InteractionParameter) child).getInteraction();
} else if (child instanceof Feature) {
  return ((Feature) child).getComponent();
} else if (child instanceof ComponentParameter) {
  return ((ComponentParameter) child).getComponent();

代码示例来源：origin: uk.ac.ebi.intact.app/data-conversion

Component boundComponent = boundDomain.getComponent();
Interactor interactor2 = boundComponent.getInteractor();

代码示例来源：origin: uk.ac.ebi.intact.util/data-conversion

Component boundComponent = boundDomain.getComponent();
Interactor interactor2 = boundComponent.getInteractor();

代码示例来源：origin: uk.ac.ebi.intact.app/data-conversion

Component boundComponent = boundDomain.getComponent();
Interactor interactor2 = boundComponent.getInteractor();

代码示例来源：origin: uk.ac.ebi.intact.core/intact-core

return ((InteractionParameter) child).getInteraction();
} else if (child instanceof Feature) {
  return ((Feature) child).getComponent();
} else if (child instanceof ComponentParameter) {
  return ((ComponentParameter) child).getComponent();

代码示例来源：origin: uk.ac.ebi.intact.core/intact-core-readonly

private void synchronizeFeature( Feature feature, boolean synchronizeAnnotatedAttributes ) {
  feature.setBoundDomain( synchronize( feature.getBoundDomain() ) );
  feature.setComponent( synchronize( feature.getComponent() ) );
  feature.setCvFeatureIdentification( synchronize( feature.getCvFeatureIdentification() ) );
  feature.setCvFeatureType( synchronize( feature.getCvFeatureType() ) );
  // cannot call setRanges in interaction because of orphan relationship limitation
  if (IntactCore.isInitializedAndDirty(feature.getRanges())){
    Collection<Range> ranges = synchronizeRanges(feature.getRanges(), feature);
    feature.getRanges().clear();
    feature.getRanges().addAll(ranges);
  }
  if (synchronizeAnnotatedAttributes){
    synchronizeAnnotatedObjectCommons( feature );
  }
}

代码示例来源：origin: uk.ac.ebi.intact.core/intact-core

private void synchronizeFeature( Feature feature, boolean synchronizeAnnotatedAttributes ) {
  feature.setBoundDomain( synchronize( feature.getBoundDomain() ) );
  feature.setComponent( synchronize( feature.getComponent() ) );
  feature.setCvFeatureIdentification( synchronize( feature.getCvFeatureIdentification() ) );
  feature.setCvFeatureType( synchronize( feature.getCvFeatureType() ) );
  // cannot call setRanges in interaction because of orphan relationship limitation
  if (IntactCore.isInitializedAndDirty(feature.getRanges())){
    Collection<Range> ranges = synchronizeRanges(feature.getRanges(), feature);
    feature.getRanges().clear();
    feature.getRanges().addAll(ranges);
  }
  if (synchronizeAnnotatedAttributes){
    synchronizeAnnotatedObjectCommons( feature );
  }
}

代码示例来源：origin: uk.ac.ebi.intact.core/intact-persister

public static String createKey(AnnotatedObject ao) {
  String key;
  final String normalizedClassName = normalizeClassName(ao.getClass());
  
  if (ao instanceof Component) {
    // So far, components have as shorltabel N/A => we need to create one that allows to discriminate them
    Component comp = (Component)ao;
    String label = comp.getInteraction().getShortLabel()+"_"+comp.getInteractor().getShortLabel();
    key = normalizedClassName +":"+label;
  } else if (ao instanceof BioSource) {
    key = normalizedClassName +":"+((BioSource)ao).getTaxId();
  } else if (ao instanceof CvObject) {
    CvObject cv = (CvObject)ao;
    CvObjectXref identity = CvObjectUtils.getPsiMiIdentityXref(cv);
    if (identity != null) {
      key = normalizedClassName +":"+identity.getPrimaryId();
    } else {
      key = normalizedClassName +":"+ao.getShortLabel();
    }
  } else if (ao instanceof Feature) {
    String label = ao.getShortLabel()+"_"+createKey(((Feature)ao).getComponent());
    key = normalizedClassName+":"+label;
  } else {
    key = normalizedClassName +":"+ao.getShortLabel();
  }
  return key;
}

代码示例来源：origin: uk.ac.ebi.intact.sanity/intact-sanity-rules

public Collection<GeneralMessage> check( Feature feature ) throws SanityRuleException {
  Collection<GeneralMessage> messages = new ArrayList<GeneralMessage>();
  final Component component = feature.getComponent();
  final Interactor interactor = component.getInteractor();
  final boolean isPolymer = ( interactor instanceof Polymer );

代码示例来源：origin: uk.ac.ebi.intact.core/intact-persister

@Override
protected void saveOrUpdateAttributes(Feature intactObject) throws PersisterException {
  super.saveOrUpdateAttributes(intactObject);
  ComponentPersister.getInstance().saveOrUpdate(intactObject.getComponent());
  CvObjectPersister cvObjectPersister = CvObjectPersister.getInstance();
  if (intactObject.getCvFeatureIdentification() != null) {
    cvObjectPersister.saveOrUpdate(intactObject.getCvFeatureIdentification());
  }
  if (intactObject.getCvFeatureType() != null) {
    cvObjectPersister.saveOrUpdate(intactObject.getCvFeatureType());
  }
  for (Range range : intactObject.getRanges()) {
    if ( range.getFromCvFuzzyType() != null ) {
      cvObjectPersister.saveOrUpdate(range.getFromCvFuzzyType());
    }
    if ( range.getToCvFuzzyType() != null ) {
      cvObjectPersister.saveOrUpdate(range.getToCvFuzzyType());
    }
  }
}

代码示例来源：origin: uk.ac.ebi.intact.core/intact-core

public Feature cloneFeature(Feature feature) throws IntactClonerException {
  if (feature == null) return null;
  Feature clone = new Feature();
  clonerManager.addClone(feature, clone);
  clone.setOwner(clone(feature.getOwner()));
  clone.setShortLabel(feature.getShortLabel());
  clone.setCvFeatureType(clone(feature.getCvFeatureType()));
  clone.setCvFeatureIdentification(clone(feature.getCvFeatureIdentification()));
  if (isCollectionClonable(feature.getRanges())) {
    Collection<Range> ranges = IntactCore.ensureInitializedRanges(feature);
    for (Range range : ranges) {
      clone.addRange(clone(range));
    }
  }
  clone.setComponent(clone(feature.getComponent()));
  return clone;
}

代码示例来源：origin: uk.ac.ebi.intact.core/intact-core-readonly

public Feature cloneFeature(Feature feature) throws IntactClonerException {
  if (feature == null) return null;
  Feature clone = new Feature();
  clonerManager.addClone(feature, clone);
  clone.setOwner(clone(feature.getOwner()));
  clone.setShortLabel(feature.getShortLabel());
  clone.setCvFeatureType(clone(feature.getCvFeatureType()));
  clone.setCvFeatureIdentification(clone(feature.getCvFeatureIdentification()));
  if (isCollectionClonable(feature.getRanges())) {
    Collection<Range> ranges = IntactCore.ensureInitializedRanges(feature);
    for (Range range : ranges) {
      clone.addRange(clone(range));
    }
  }
  clone.setComponent(clone(feature.getComponent()));
  return clone;
}

代码示例来源：origin: uk.ac.ebi.intact.core/intact-persister

Component component = compPersister.syncIfTransient(intactObject.getComponent());
intactObject.setComponent(component);

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