uk.ac.ebi.intact.model.Feature.setComponent()方法的使用及代码示例

x33g5p2x  于2022-01-19 转载在 其他  
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本文整理了Java中uk.ac.ebi.intact.model.Feature.setComponent()方法的一些代码示例，展示了Feature.setComponent()的具体用法。这些代码示例主要来源于Github/Stackoverflow/Maven等平台，是从一些精选项目中提取出来的代码，具有较强的参考意义，能在一定程度帮忙到你。Feature.setComponent()方法的具体详情如下：
包路径：uk.ac.ebi.intact.model.Feature
类名称：Feature
方法名：setComponent

Feature.setComponent介绍

[英]This method adds a 'callback' to the Component to which a Feature applies. It has the SIDE EFFECT of also adding the Feature object to the Component's list of binding domians.
[中]此方法向应用功能的组件添加“回调”。它的副作用是将要素对象添加到组件的绑定域列表中。

代码示例

代码示例来源：origin: uk.ac.ebi.intact.core/intact-core-readonly

public void removeFeature( Feature feature ) {
  boolean removed = this.bindingDomains.remove( feature );
  if ( removed ) {
    feature.setComponent( null );
  }
}

代码示例来源：origin: uk.ac.ebi.intact.core/intact-core-readonly

public void addFeature( Feature feature ) {
  // we accept duplicated features in a participant if we want to link a binding site to different features
  //if ( !this.bindingDomains.contains( feature ) ) {
    this.bindingDomains.add( feature );
    feature.setComponent( this );
  //}
}

代码示例来源：origin: uk.ac.ebi.intact.core/intact-core

public void removeFeature( Feature feature ) {
  boolean removed = this.bindingDomains.remove( feature );
  if ( removed ) {
    feature.setComponent( null );
  }
}

代码示例来源：origin: uk.ac.ebi.intact.core/intact-core

public void addFeature( Feature feature ) {
  // we accept duplicated features in a participant if we want to link a binding site to different features
  //if ( !this.bindingDomains.contains( feature ) ) {
    this.bindingDomains.add( feature );
    feature.setComponent( this );
  //}
}

代码示例来源：origin: uk.ac.ebi.intact/intact-core

public void removeBindingDomain( Feature feature ) {
  boolean removed = this.bindingDomains.remove( feature );
  if ( removed ) {
    feature.setComponent( null );
  }
}

代码示例来源：origin: uk.ac.ebi.intact/intact-core

public void addBindingDomain( Feature feature ) {
  if ( !this.bindingDomains.contains( feature ) ) {
    this.bindingDomains.add( feature );
    feature.setComponent( this );
  }
}

代码示例来源：origin: uk.ac.ebi.intact.core/intact-core

/**
  * This creates a stable (non-random) interaction
  */
 public Interaction createDeterministicInteraction() {
   Interaction interaction = createInteraction("fooprey-barbait",
                         createDeterministicProtein("A2", "barbait"),
                         createDeterministicProtein("A1", "fooprey"),
                         createDeterministicExperiment());
   interaction.getAnnotations().add(createAnnotation("This is an annotation", CvTopic.COMMENT_MI_REF, CvTopic.COMMENT));
   CvFeatureType featureType = createCvObject(CvFeatureType.class, CvFeatureType.EXPERIMENTAL_FEATURE_MI_REF, CvFeatureType.EXPERIMENTAL_FEATURE);
   Feature feature = createFeature("feature1", featureType);
   feature.setComponent(null);
   Range range = createRange(1, 1, 5, 5);
   feature.addRange(range);
   interaction.getComponents().iterator().next().addBindingDomain(feature);
//       interaction.getComponents().iterator().next().addComponentParameter(createDeterministicComponentParameter());
//       interaction.addXref(createPrimaryReferenceXref( interaction , "testreference"));
   interaction.addConfidence( createDeterministicConfidence());
   interaction.addParameter( createDeterministicInteractionParameter() );
   return interaction;
 }

代码示例来源：origin: uk.ac.ebi.intact.core/intact-core-readonly

/**
  * This creates a stable (non-random) interaction
  */
 public Interaction createDeterministicInteraction() {
   Interaction interaction = createInteraction("fooprey-barbait",
                         createDeterministicProtein("A2", "barbait"),
                         createDeterministicProtein("A1", "fooprey"),
                         createDeterministicExperiment());
   interaction.getAnnotations().add(createAnnotation("This is an annotation", CvTopic.COMMENT_MI_REF, CvTopic.COMMENT));
   CvFeatureType featureType = createCvObject(CvFeatureType.class, CvFeatureType.EXPERIMENTAL_FEATURE_MI_REF, CvFeatureType.EXPERIMENTAL_FEATURE);
   Feature feature = createFeature("feature1", featureType);
   feature.setComponent(null);
   Range range = createRange(1, 1, 5, 5);
   feature.addRange(range);
   interaction.getComponents().iterator().next().addBindingDomain(feature);
//       interaction.getComponents().iterator().next().addComponentParameter(createDeterministicComponentParameter());
//       interaction.addXref(createPrimaryReferenceXref( interaction , "testreference"));
   interaction.addConfidence( createDeterministicConfidence());
   interaction.addParameter( createDeterministicInteractionParameter() );
   return interaction;
 }

代码示例来源：origin: uk.ac.ebi.intact.core/intact-core-readonly

private void synchronizeFeature( Feature feature, boolean synchronizeAnnotatedAttributes ) {
  feature.setBoundDomain( synchronize( feature.getBoundDomain() ) );
  feature.setComponent( synchronize( feature.getComponent() ) );
  feature.setCvFeatureIdentification( synchronize( feature.getCvFeatureIdentification() ) );
  feature.setCvFeatureType( synchronize( feature.getCvFeatureType() ) );
  // cannot call setRanges in interaction because of orphan relationship limitation
  if (IntactCore.isInitializedAndDirty(feature.getRanges())){
    Collection<Range> ranges = synchronizeRanges(feature.getRanges(), feature);
    feature.getRanges().clear();
    feature.getRanges().addAll(ranges);
  }
  if (synchronizeAnnotatedAttributes){
    synchronizeAnnotatedObjectCommons( feature );
  }
}

代码示例来源：origin: uk.ac.ebi.intact.core/intact-core

private void synchronizeFeature( Feature feature, boolean synchronizeAnnotatedAttributes ) {
  feature.setBoundDomain( synchronize( feature.getBoundDomain() ) );
  feature.setComponent( synchronize( feature.getComponent() ) );
  feature.setCvFeatureIdentification( synchronize( feature.getCvFeatureIdentification() ) );
  feature.setCvFeatureType( synchronize( feature.getCvFeatureType() ) );
  // cannot call setRanges in interaction because of orphan relationship limitation
  if (IntactCore.isInitializedAndDirty(feature.getRanges())){
    Collection<Range> ranges = synchronizeRanges(feature.getRanges(), feature);
    feature.getRanges().clear();
    feature.getRanges().addAll(ranges);
  }
  if (synchronizeAnnotatedAttributes){
    synchronizeAnnotatedObjectCommons( feature );
  }
}

代码示例来源：origin: uk.ac.ebi.intact.dataexchange.psimi/intact-psixml-converters

Feature feature = featureConverter.psiToIntact(psiFeature);
component.getBindingDomains().add(feature);
feature.setComponent(component);

代码示例来源：origin: uk.ac.ebi.intact.core/intact-core

protected void copyComponent( Component source, Component target ) {
  copyProperty(source, "stoichiometry", target);
  copyProperty(source, "interaction", target);
  copyProperty(source, "interactor", target);
  copyProperty(source, "cvBiologicalRole", target);
  copyProperty(source, "cvExperimentalRole", target);
  copyProperty(source, "expressedIn", target);
  copyCollection( source.getBindingDomains(), target.getBindingDomains() );
  for (Feature bindingDomain : target.getBindingDomains()) {
    bindingDomain.setComponent(target);
  }
  copyCollection( source.getExperimentalPreparations(), target.getExperimentalPreparations() );
  copyCollection( source.getParticipantDetectionMethods(), target.getParticipantDetectionMethods() );
  copyCollection( source.getParameters(), target.getParameters() );
}

代码示例来源：origin: uk.ac.ebi.intact.core/intact-core-readonly

protected void copyComponent( Component source, Component target ) {
  copyProperty(source, "stoichiometry", target);
  copyProperty(source, "interaction", target);
  copyProperty(source, "interactor", target);
  copyProperty(source, "cvBiologicalRole", target);
  copyProperty(source, "cvExperimentalRole", target);
  copyProperty(source, "expressedIn", target);
  copyCollection( source.getBindingDomains(), target.getBindingDomains() );
  for (Feature bindingDomain : target.getBindingDomains()) {
    bindingDomain.setComponent(target);
  }
  copyCollection( source.getExperimentalPreparations(), target.getExperimentalPreparations() );
  copyCollection( source.getParticipantDetectionMethods(), target.getParticipantDetectionMethods() );
  copyCollection( source.getParameters(), target.getParameters() );
}

代码示例来源：origin: uk.ac.ebi.intact.core/intact-core

public Feature cloneFeature(Feature feature) throws IntactClonerException {
  if (feature == null) return null;
  Feature clone = new Feature();
  clonerManager.addClone(feature, clone);
  clone.setOwner(clone(feature.getOwner()));
  clone.setShortLabel(feature.getShortLabel());
  clone.setCvFeatureType(clone(feature.getCvFeatureType()));
  clone.setCvFeatureIdentification(clone(feature.getCvFeatureIdentification()));
  if (isCollectionClonable(feature.getRanges())) {
    Collection<Range> ranges = IntactCore.ensureInitializedRanges(feature);
    for (Range range : ranges) {
      clone.addRange(clone(range));
    }
  }
  clone.setComponent(clone(feature.getComponent()));
  return clone;
}

代码示例来源：origin: uk.ac.ebi.intact.core/intact-core-readonly

public Feature cloneFeature(Feature feature) throws IntactClonerException {
  if (feature == null) return null;
  Feature clone = new Feature();
  clonerManager.addClone(feature, clone);
  clone.setOwner(clone(feature.getOwner()));
  clone.setShortLabel(feature.getShortLabel());
  clone.setCvFeatureType(clone(feature.getCvFeatureType()));
  clone.setCvFeatureIdentification(clone(feature.getCvFeatureIdentification()));
  if (isCollectionClonable(feature.getRanges())) {
    Collection<Range> ranges = IntactCore.ensureInitializedRanges(feature);
    for (Range range : ranges) {
      clone.addRange(clone(range));
    }
  }
  clone.setComponent(clone(feature.getComponent()));
  return clone;
}

代码示例来源：origin: uk.ac.ebi.intact.core/intact-persister

intactObject.setComponent(component);

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