uk.ac.ebi.intact.model.Interaction.addXref()方法的使用及代码示例

x33g5p2x  于2022-01-21 转载在 其他  
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本文整理了Java中uk.ac.ebi.intact.model.Interaction.addXref()方法的一些代码示例,展示了Interaction.addXref()的具体用法。这些代码示例主要来源于Github/Stackoverflow/Maven等平台,是从一些精选项目中提取出来的代码,具有较强的参考意义,能在一定程度帮忙到你。Interaction.addXref()方法的具体详情如下:
包路径:uk.ac.ebi.intact.model.Interaction
类名称:Interaction
方法名:addXref

Interaction.addXref介绍

暂无

代码示例

代码示例来源:origin: uk.ac.ebi.intact.core/intact-core-readonly

public Interaction createInteractionRandomBinary(String imexId) {
  CvInteractionType cvInteractionType = createCvObject(CvInteractionType.class, CvInteractionType.DIRECT_INTERACTION_MI_REF, CvInteractionType.DIRECT_INTERACTION);
  CvInteractorType intType = createCvObject(CvInteractorType.class, CvInteractorType.INTERACTION_MI_REF, CvInteractorType.INTERACTION );
  Experiment experimentEmpty = createExperimentEmpty();
  Interaction interaction = new InteractionImpl(new ArrayList<Experiment>(Arrays.asList(experimentEmpty)),
                         cvInteractionType, intType, nextString("label"), getInstitution());
  experimentEmpty.getInteractions().add(interaction);
  createComponentBait(interaction, createProteinRandom());
  createComponentPrey(interaction, createProteinRandom());
  String shortLabel = InteractionUtils.calculateShortLabel(interaction);
  interaction.setShortLabel(shortLabel);
  if (imexId != null) {
    CvObjectBuilder cvBuilder = new CvObjectBuilder();
    CvXrefQualifier idQual = cvBuilder.createIdentityCvXrefQualifier(getInstitution());
    CvDatabase imexDb = createCvObject(CvDatabase.class, CvDatabase.IMEX_MI_REF, CvDatabase.IMEX);
    interaction.addXref(new InteractorXref(getInstitution(), imexDb, imexId, idQual));
  }
  return interaction;
}

代码示例来源:origin: uk.ac.ebi.intact.core/intact-core

public Interaction createInteractionRandomBinary(String imexId) {
  CvInteractionType cvInteractionType = createCvObject(CvInteractionType.class, CvInteractionType.DIRECT_INTERACTION_MI_REF, CvInteractionType.DIRECT_INTERACTION);
  CvInteractorType intType = createCvObject(CvInteractorType.class, CvInteractorType.INTERACTION_MI_REF, CvInteractorType.INTERACTION );
  Experiment experimentEmpty = createExperimentEmpty();
  Interaction interaction = new InteractionImpl(new ArrayList<Experiment>(Arrays.asList(experimentEmpty)),
                         cvInteractionType, intType, nextString("label"), getInstitution());
  experimentEmpty.getInteractions().add(interaction);
  createComponentBait(interaction, createProteinRandom());
  createComponentPrey(interaction, createProteinRandom());
  String shortLabel = InteractionUtils.calculateShortLabel(interaction);
  interaction.setShortLabel(shortLabel);
  if (imexId != null) {
    CvObjectBuilder cvBuilder = new CvObjectBuilder();
    CvXrefQualifier idQual = cvBuilder.createIdentityCvXrefQualifier(getInstitution());
    CvDatabase imexDb = createCvObject(CvDatabase.class, CvDatabase.IMEX_MI_REF, CvDatabase.IMEX);
    interaction.addXref(new InteractorXref(getInstitution(), imexDb, imexId, idQual));
  }
  return interaction;
}

代码示例来源:origin: uk.ac.ebi.intact.util/data-conversion

interaction.addXref( xref );
IntactContext.getCurrentInstance().getDataContext().getDaoFactory().getXrefDao().persist( xref );

代码示例来源:origin: uk.ac.ebi.intact.dataexchange.psimi.legacy/data-conversion

interaction.addXref( xref );
IntactContext.getCurrentInstance().getDataContext().getDaoFactory().getXrefDao().persist( xref );

代码示例来源:origin: uk.ac.ebi.intact.app/data-conversion

interaction.addXref( xref );
IntactContext.getCurrentInstance().getDataContext().getDaoFactory().getXrefDao().persist( xref );

代码示例来源:origin: uk.ac.ebi.intact.dataexchange.psimi/intact-psixml-converters

if (imexId != null && !alreadyContainsImexXref(interaction)) {
  final InteractorXref imexXref = createImexXref(interaction, imexId);
  interaction.addXref(imexXref);

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