uk.ac.ebi.intact.model.Interaction.getConfidences()方法的使用及代码示例

x33g5p2x  于2022-01-21 转载在 其他  
字(11.7k)|赞(0)|评价(0)|浏览(85)

本文整理了Java中uk.ac.ebi.intact.model.Interaction.getConfidences()方法的一些代码示例，展示了Interaction.getConfidences()的具体用法。这些代码示例主要来源于Github/Stackoverflow/Maven等平台，是从一些精选项目中提取出来的代码，具有较强的参考意义，能在一定程度帮忙到你。Interaction.getConfidences()方法的具体详情如下：
包路径：uk.ac.ebi.intact.model.Interaction
类名称：Interaction
方法名：getConfidences

Interaction.getConfidences介绍

暂无

代码示例

代码示例来源：origin: uk.ac.ebi.intact.core/intact-core

/**
 * Retrieves the confidences from an interaction, initializing them if necessary.
 * Do not set the initialized collection of confidences because confidences cannot be orphan
 * @param interaction the interaction
 * @return The returned confidences are ensured to be initialized
 * @since 2.4.0
 */
public static Collection<Confidence> ensureInitializedConfidences(Interaction interaction) {
  Collection<Confidence> confidences;
  if (IntactCore.isInitialized(interaction.getConfidences())) {
    confidences = interaction.getConfidences();
  } else {
    confidences = IntactContext.getCurrentInstance().getDaoFactory().getConfidenceDao().getByInteractionAc(interaction.getAc());
  }
  return confidences;
}

代码示例来源：origin: uk.ac.ebi.intact.core/intact-core-readonly

/**
 * Retrieves the confidences from an interaction, initializing them if necessary.
 * Do not set the initialized collection of confidences because confidences cannot be orphan
 * @param interaction the interaction
 * @return The returned confidences are ensured to be initialized
 * @since 2.4.0
 */
public static Collection<Confidence> ensureInitializedConfidences(Interaction interaction) {
  Collection<Confidence> confidences;
  if (IntactCore.isInitialized(interaction.getConfidences())) {
    confidences = interaction.getConfidences();
  } else {
    confidences = IntactContext.getCurrentInstance().getDaoFactory().getConfidenceDao().getByInteractionAc(interaction.getAc());
  }
  return confidences;
}

代码示例来源：origin: uk.ac.ebi.intact.dataexchange.psimi.legacy/data-conversion

confidences = ((Interaction)annotatedObject).getConfidences();

代码示例来源：origin: uk.ac.ebi.intact.dataexchange.psimi/intact-psixml-converters

protected void failIfInconsistentConversion(Interaction intact, psidev.psi.mi.xml.model.Interaction psi, int numberOfAuthorConfAttributes) {
  Collection<Experiment> experiments;
  Collection<Component> participants;
  Collection<Confidence> confidences;
  if (isCheckInitializedCollections()){
    experiments = IntactCore.ensureInitializedExperiments(intact);
    participants = IntactCore.ensureInitializedParticipants(intact);
    confidences = IntactCore.ensureInitializedConfidences(intact);
  }
  else {
    experiments = intact.getExperiments();
    participants = intact.getComponents();
    confidences = intact.getConfidences();
  }
  failIfInconsistentCollectionSize("experiment", experiments, psi.getExperiments());
  failIfInconsistentCollectionSize("participant", participants, psi.getParticipants());
  Collection<Confidence> confs = confidences;
  if (confs.size() > 0 && psi.getConfidences().size() + numberOfAuthorConfAttributes > 0 && confs.size() != (psi.getConfidences().size() + numberOfAuthorConfAttributes)) {
    throw new InconsistentConversionException("Confidence", confs.size(), psi.getConfidences().size() + numberOfAuthorConfAttributes);
  }
}

代码示例来源：origin: uk.ac.ebi.intact.dataexchange.psimi/intact-psixml-converters

protected void failIfInconsistentPsiConversion(Interaction intact, psidev.psi.mi.xml.model.Interaction psi) {
  Collection<Experiment> experiments;
  Collection<Component> participants;
  Collection<Confidence> confidences;
  if (isCheckInitializedCollections()){
    experiments = IntactCore.ensureInitializedExperiments(intact);
    participants = IntactCore.ensureInitializedParticipants(intact);
    confidences = IntactCore.ensureInitializedConfidences(intact);
  }
  else {
    experiments = intact.getExperiments();
    participants = intact.getComponents();
    confidences = intact.getConfidences();
  }
  failIfInconsistentCollectionSize("experiment", experiments, psi.getExperiments());
  failIfInconsistentCollectionSize("participant", participants, psi.getParticipants());
  Collection<Confidence> confs = confidences;
  if (confs.size() > 0 && psi.getConfidences().size() > 0 && (confs.size()) != psi.getConfidences().size()) {
    throw new InconsistentConversionException("Confidence", confs.size(), psi.getConfidences().size());
  }
}

代码示例来源：origin: uk.ac.ebi.intact.core/intact-core-readonly

private void synchronizeInteraction( Interaction interaction, boolean synchronizeAnnotatedAttributes ) {
  interaction.setCvInteractionType( synchronize( interaction.getCvInteractionType() ) );
  interaction.setCvInteractorType( synchronize( interaction.getCvInteractorType() ) );
  if (IntactCore.isInitializedAndDirty(interaction.getComponents())){
    Collection<Component> components = synchronizeCollection(interaction.getComponents());
    interaction.getComponents().clear();
    interaction.getComponents().addAll(components);
  }
  interaction.setBioSource( synchronize( interaction.getBioSource() ) );
  if (IntactCore.isInitializedAndDirty(interaction.getExperiments())){
    Collection<Experiment> experiment = synchronizeCollection(interaction.getExperiments());
    interaction.getExperiments().clear();
    interaction.getExperiments().addAll(experiment);
  }
  // cannot call setConfidences in interaction because of orphan relationship limitation
  if (IntactCore.isInitializedAndDirty(interaction.getConfidences())){
    Collection<Confidence> confidences = synchronizeConfidences(interaction.getConfidences(), interaction);
    interaction.getConfidences().clear();
    interaction.getConfidences().addAll(confidences);
  }
  // cannot call setParameters in interaction because of orphan relationship limitation
  if (IntactCore.isInitializedAndDirty(interaction.getParameters())){
    Collection<InteractionParameter> interactionParameters = synchronizeInteractionParameters(interaction.getParameters(), interaction);
    interaction.getParameters().clear();
    interaction.getParameters().addAll(interactionParameters);
  }
  if (synchronizeAnnotatedAttributes){
    synchronizeAnnotatedObjectCommons( interaction );
  }
}

代码示例来源：origin: uk.ac.ebi.intact.core/intact-core

private void synchronizeInteraction( Interaction interaction, boolean synchronizeAnnotatedAttributes ) {
  interaction.setCvInteractionType( synchronize( interaction.getCvInteractionType() ) );
  interaction.setCvInteractorType( synchronize( interaction.getCvInteractorType() ) );
  if (IntactCore.isInitializedAndDirty(interaction.getComponents())){
    Collection<Component> components = synchronizeCollection(interaction.getComponents());
    interaction.getComponents().clear();
    interaction.getComponents().addAll(components);
  }
  interaction.setBioSource( synchronize( interaction.getBioSource() ) );
  if (IntactCore.isInitializedAndDirty(interaction.getExperiments())){
    Collection<Experiment> experiment = synchronizeCollection(interaction.getExperiments());
    interaction.getExperiments().clear();
    interaction.getExperiments().addAll(experiment);
  }
  // cannot call setConfidences in interaction because of orphan relationship limitation
  if (IntactCore.isInitializedAndDirty(interaction.getConfidences())){
    Collection<Confidence> confidences = synchronizeConfidences(interaction.getConfidences(), interaction);
    interaction.getConfidences().clear();
    interaction.getConfidences().addAll(confidences);
  }
  // cannot call setParameters in interaction because of orphan relationship limitation
  if (IntactCore.isInitializedAndDirty(interaction.getParameters())){
    Collection<InteractionParameter> interactionParameters = synchronizeInteractionParameters(interaction.getParameters(), interaction);
    interaction.getParameters().clear();
    interaction.getParameters().addAll(interactionParameters);
  }
  if (synchronizeAnnotatedAttributes){
    synchronizeAnnotatedObjectCommons( interaction );
  }
}

代码示例来源：origin: uk.ac.ebi.intact.core/intact-core-readonly

protected void copyInteraction( Interaction source, Interaction target ) {
  copyProperty(source, "KD", target);
  copyProperty(source, "crc", target);
  copyProperty(source, "cvInteractionType", target);
  copyCollection( source.getComponents(), target.getComponents() );
  copyCollection( source.getExperiments(), target.getExperiments() );
  copyCollection( source.getConfidences(), target.getConfidences() );
  
  copyCollection( source.getParameters(), target.getParameters() );
  copyInteractorCommons( source, target );
  // we have ommited CRC on purpose
}

代码示例来源：origin: uk.ac.ebi.intact.core/intact-core

protected void copyInteraction( Interaction source, Interaction target ) {
  copyProperty(source, "KD", target);
  copyProperty(source, "crc", target);
  copyProperty(source, "cvInteractionType", target);
  copyCollection( source.getComponents(), target.getComponents() );
  copyCollection( source.getExperiments(), target.getExperiments() );
  copyCollection( source.getConfidences(), target.getConfidences() );
  
  copyCollection( source.getParameters(), target.getParameters() );
  copyInteractorCommons( source, target );
  // we have ommited CRC on purpose
}

代码示例来源：origin: uk.ac.ebi.intact.dataexchange.psimi/intact-psimitab-converters

if (!interaction.getConfidences().isEmpty()){
  for (uk.ac.ebi.intact.model.Confidence conf : interaction.getConfidences()){
    Confidence confField = confidenceConverter.intactToCalimocho(conf);

代码示例来源：origin: uk.ac.ebi.intact.core/intact-core

protected void traverseInteraction(Interaction interaction, IntactVisitor ... visitors) {
  if (interaction == null) return;
  for (IntactVisitor visitor : visitors) {
    visitor.visitInteraction(interaction);
  }
  // check if this element has been traversed already, to avoid cyclic recursion
  if (recursionChecker.isAlreadyTraversed(interaction)) {
    return;
  }
  traverse(interaction.getCvInteractionType(), visitors);
  traverse(interaction.getExperiments(), visitors);
  traverse(interaction.getComponents(), visitors);
  traverse(interaction.getConfidences(), visitors);
  traverse(interaction.getParameters(), visitors);
}

代码示例来源：origin: uk.ac.ebi.intact.core/intact-core-readonly

protected void traverseInteraction(Interaction interaction, IntactVisitor ... visitors) {
  if (interaction == null) return;
  for (IntactVisitor visitor : visitors) {
    visitor.visitInteraction(interaction);
  }
  // check if this element has been traversed already, to avoid cyclic recursion
  if (recursionChecker.isAlreadyTraversed(interaction)) {
    return;
  }
  traverse(interaction.getCvInteractionType(), visitors);
  traverse(interaction.getExperiments(), visitors);
  traverse(interaction.getComponents(), visitors);
  traverse(interaction.getConfidences(), visitors);
  traverse(interaction.getParameters(), visitors);
}

代码示例来源：origin: uk.ac.ebi.intact.dataexchange.psimi/intact-psixml-converters

experiments = intactObject.getExperiments();
components = intactObject.getComponents();
confidences = intactObject.getConfidences();
parameters = intactObject.getParameters();
annotations = intactObject.getAnnotations();

代码示例来源：origin: uk.ac.ebi.intact.dataexchange.psimi/intact-psixml-converters

protected void failIfInconsistentConversion(Interaction intact, psidev.psi.mi.xml.model.Interaction psi) {
  Collection<Experiment> experiments;
  Collection<Component> participants;
  Collection<Confidence> confidences;
  if (isCheckInitializedCollections()){
    experiments = IntactCore.ensureInitializedExperiments(intact);
    participants = IntactCore.ensureInitializedParticipants(intact);
    confidences = IntactCore.ensureInitializedConfidences(intact);
  }
  else {
    experiments = intact.getExperiments();
    participants = intact.getComponents();
    confidences = intact.getConfidences();
  }
  failIfInconsistentCollectionSize("experiment", experiments, psi.getExperiments());
  failIfInconsistentCollectionSize("participant", participants, psi.getParticipants());
  failIfInconsistentCollectionSize( "confidence", confidences, psi.getConfidences());
}

代码示例来源：origin: uk.ac.ebi.intact.core/intact-core

clone.setCrc(interaction.getCrc());
if (isCollectionClonable(interaction.getConfidences())) {
  Collection<Confidence> confidences = IntactCore.ensureInitializedConfidences(interaction);

代码示例来源：origin: uk.ac.ebi.intact.core/intact-core-readonly

clone.setCrc(interaction.getCrc());
if (isCollectionClonable(interaction.getConfidences())) {
  Collection<Confidence> confidences = IntactCore.ensureInitializedConfidences(interaction);

内容来源于网络，如有侵权，请联系作者删除！

Interaction

相关文章

    查看更多

    热门标签

    更多
    JavaquerypythonNode开发语言requestUtil数据库Table后端算法LoggerMessageElementParser

    最新文章

    更多
    • 蜀ICP备13028337号-1 大数据知识库 https://www.saoniuhuo.com © All rights reserved
    • 本站内容来源互联网,如果侵犯您的权益请联系我们删除, 联系方式：448109455@qq.com